- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2010-04-21 17:44:16+12:00
- Desc:
- need to ensure graph id's are unique across models in order for the reference description code to work.
- Permanent Source URI:
- https://models.fieldml.org/workspace/eskandari_wright_loo_2005/rawfile/789015a22279336077a6cb8f9e92ef321e458d44/experiments/figure-03.xml
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xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
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xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#" xmlns:csim="http://cellml.sourceforge.net/CellMLSimulator/#">
<rdf:Description rdf:ID="andre">
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<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
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<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
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</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</rdf:Description>
<rdf:Description rdf:ID="jonna">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Terkildsen</vCard:Family>
<vCard:Given>Jonna</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>j.terkildsen@auckland.ac.nz</rdf:value>
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</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</rdf:Description>
<rdf:Description rdf:about="">
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-21</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Auckland Bioengineering Institute, The University of Auckland.
</dc:publisher>
</rdf:Description>
<rdf:Description rdf:about="#figure_03">
<cs:simulation>
<rdf:Description rdf:ID="simulation_1">
<cs:multistepMethod>bdf</cs:multistepMethod>
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<cs:linearSolver>dense</cs:linearSolver>
<cs:boundIntervals rdf:parseType="Collection">
<rdf:Description>
<cs:boundVariable>
<rdf:Description rdf:about="#time_1" />
</cs:boundVariable>
<cs:maximumStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
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</cs:simulation>
</rdf:Description>
<rdf:Description>
<cg:graph>
<rdf:Description rdf:ID="SGLT1-figure-03-a">
<cg:title>Figure 3(a)</cg:title>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
Reproduction of figure 3(a) from Eskandari et al (2005).
</rdf:value>
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An example validation study using annotated CellML models
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</rdf:Description>
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<cg:title>Figure 3(b)</cg:title>
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Reproduction of figure 3(b) from Eskandari et al (2005).
</rdf:value>
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An example validation study using annotated CellML models
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</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="base.xml">
<component component_ref="variables" name="model_2" />
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink"
xlink:href="../decomposed-model/eskandari_2005_units_model.xml">
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<units name="volt" units_ref="volt" />
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<units name="second" units_ref="second" />
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</import>
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public_interface="out" initial_value="10e-3" />
<variable cmeta:id="glucose_i_1" name="glucose_i" units="M"
public_interface="out" initial_value="100e-3" />
<variable cmeta:id="glucose_o_1" name="glucose_o" units="M"
public_interface="out" initial_value="0.0" />
<variable cmeta:id="V_initial_1" name="V_initial" units="volt"
public_interface="out" initial_value="-150e-3" />
<variable cmeta:id="V_dot_1" name="V_dot" units="volt_per_second"
public_interface="out" initial_value="1e-3" />
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public_interface="in" />
<variable cmeta:id="V_1" name="V" units="volt"
public_interface="in" />
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public_interface="out" initial_value="10e-3" />
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<variable cmeta:id="V_dot_2" name="V_dot" units="volt_per_second"
public_interface="out" initial_value="1e-3" />
<variable cmeta:id="time_2" name="time" units="second"
public_interface="in" />
<variable cmeta:id="V_2" name="V" units="volt"
public_interface="in" />
<variable cmeta:id="I_NaGl_SS_2" name="I_NaGl_SS"
public_interface="in" units="uA" />
</component>
<connection>
<map_components component_1="variables_1" component_2="model_1" />
<map_variables variable_1="Na_i" variable_2="Na_i" />
<map_variables variable_1="Na_o" variable_2="Na_o" />
<map_variables variable_1="glucose_i" variable_2="glucose_i" />
<map_variables variable_1="glucose_o" variable_2="glucose_o" />
<map_variables variable_1="V_initial" variable_2="V_initial" />
<map_variables variable_1="V_dot" variable_2="V_dot" />
<map_variables variable_1="V" variable_2="V" />
<map_variables variable_1="time" variable_2="time" />
<map_variables variable_1="I_NaGl_SS" variable_2="I_NaGl_SS" />
</connection>
<connection>
<map_components component_1="variables_2" component_2="model_2" />
<map_variables variable_1="Na_i" variable_2="Na_i" />
<map_variables variable_1="Na_o" variable_2="Na_o" />
<map_variables variable_1="glucose_i" variable_2="glucose_i" />
<map_variables variable_1="glucose_o" variable_2="glucose_o" />
<map_variables variable_1="V_initial" variable_2="V_initial" />
<map_variables variable_1="V_dot" variable_2="V_dot" />
<map_variables variable_1="V" variable_2="V" />
<map_variables variable_1="time" variable_2="time" />
<map_variables variable_1="I_NaGl_SS" variable_2="I_NaGl_SS" />
</connection>
</model>
