Workspaces

The list of model workspaces.

severi_fantini_charawi_difrancesco_2012
12 L Platform 1 model codes
12 Labours Kidney Epithelial model
A 0D model of the Heart
A Bifurcation Analysis of Two Coupled Calcium Oscillators, Bindschadler and Sneyd 2001
A computational human atrial myofibroblast electrophysiological model
A computational human cardiac Purkinje electrophysiological model
A computational human ventricular electrophysiological model
A computational human ventricular electrophysiological model
A computational model of the human left-ventricular epicardial myocyte, Iyer, Mazhari, Winslow, 2004
A mathematical model of rat distal convoluted tubule. I. Cotransporter function in early DCT.
A mathematical model of the outer medullary collecting duct of the rat, A.M. Weinstein, 2000
A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
A model for pacemaking in substantia nigra neurons (A simple model based on a spherical geometry)
A Model of Cardiac Electrical Activity Incorporating Ionic Pumps and Concentration Changes, DiFrancesco, Noble, 1985
A model of intracellular pH control
A Primer on Modular Mass Action Modelling with CellML
A review of cardiac cellular electrophysiology models
A Simplified Local Control Model of Calcium-Induced Calcium Release in Cardiac Ventricular Myocytes, Hinch, Greenstein, Tanskanen, Xu, Winslow, 2004
A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
A single compartment model of pacemaking in dissasociated Substantia nigra neurons with hyperbolic tetrahedral geometry
A Thermodynamic Model of the Cardiac Sarcoplasmic/Endoplasmic Ca(2+) (SERCA) Pump, Kenneth Tran, Nicolas P. Smith, Denis S. Loiselle, and Edmund J. Crampin, 2009
ABI Comfort Simulator
Acid-Base Physiology
Activation of spaK
Activation of spaR
Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study
Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study
Adrian, Chandler, Hodgkin, 1970
AE1-BG
Aguda, B, 1999
Aguda, B, 1999
Aguda, Tang, 1999
Al Abed, Guo, Lovell, Dokos, 2013 (Generic Cardiac Ionic Models)
Albert, Haanstra, Hannaert, Van Roy, Opperdoes, Bakker and Michels, 2005
Albrecht, Colegrove, Friel, 2002
Albrecht, Colegrove, Hongpaisan, Pivovarova, Andrews, Friel, 2001
Alexander and Wahl 2010
Alexander and Wahl 2010
Aliev & Panfilov (1996)
An encoding of the human ORd model by Steve Neiderer
An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements
An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements, Mathieu Cloutier, Fiachra B. Bolger, John P. Lowry and Peter Wellstead, 2009
Andre's Hodgkin Huxley model
Anion Exchanger
Annotation for a Symmetric Stomach Surface
Annotation for Human Stomach Surface
Aon, Cortassa, 2002
Approximating Sine Waves
Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation
Aslanidi 2009
Aslanidi 2009
Aslanidi Atrial Model 2009
Aslanidi_etal_2010
Asthagiri, Lauffenburger, 2001
Atrial fibroblast model
Bacillus Chassis
Bagci 2006
Bagci 2008
Bagci 2008
Bakker, Mensonides, Teusink, Vanhoek, Michels, Westerhoff, 2000
Bakker, Michels, Opperdoes, Westerhoff, 1997
Barberis, Klipp, Vanoni, Alberghina, 2007
Barberis, Klipp, Vanoni, Alberghina, 2007
Bartolucci_Passini_Severi_2020
Basket Catheter Emulator
Baylor, Hollingworth, Chandler, 2002
Beard, 2005
Beeler, Reuter, 1977
Beeler, Reuter, 1977 uncertainty example
Beeler, Reuter, 1977 uncertainty example
Benson 2008
Benson 2008
Bental, 2006
Bental, 2006
Bernus, Wilders, Zemlin, Verschelde, Panfilov, 2002
Bertram, Arnot, Zamponi, 2002
Bertram, Pedersen, Luciani and Sherman 2006
Bertram, Previte, Sherman, Kinard, Satin, 2000
Bertram, Previte, Sherman, Kinard, Satin, 2000
Bertram, Rhoads and Cimbora 2008
Bertram, Satin, Pedersen, Luciani, Sherman, 2007
Bertram, Satin, Pedersen, Luciani, Sherman, 2007
Bertram, Satin, Zhang, Smolen, Sherman, 2004
Bertram, Sherman, 2004
Bertram, Smolen, Sherman, Mears, Atwater, Martin, Soria, 1995
Best Practice 1.0 and 1.1 Model Diagrams
BG Mica models
BG_B1AR
BG_cAMP
BG_component_library
BG_composite_M2
BG_GiProtein
BG_GPCR_B1AR_reduced
BG_GPCR_M2_reduced
BG_GsProtein
BG_GsProtein_sneyd
BG_Inhib1
BG_LCC
BG_LRGbinding_B1AR
BG_LRGbinding_M2
BG_PKA
BG_PLB
BG_RyR
BG_SERCA
BG_TRPN
Bhalla, Iyengar, 1999
Bifurcation analysis of the regulatory modules of the mammalian G1/S transition
Bindschadler, Sneyd, 2001
Bingzheng, Zhenye, Liansong, 1990
Biophysical Characteristics of the Pig Kidney Na/Glucose Cotransporter SGLT2 Reveal a Common Mechanism for SGLT1 and SGLT2, Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
Blood HbO2 and HbCO2 Dissociation Curves
Body flatmap
Bond Graph Circulation
Bond Graph Model of Neonatal Circulation
Bondarenko, Szigeti, Bett, Kim, Rasmusson, 2004
BondGraph Basic
Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
Bonhoeffer, Rembiszewski, Ortiz, Nixon, 2000
Borghans 1997
Bornheimer et al. 2004
Boyett, Zhang, Garny, Holden, 2001
BPS2020 model
Brightman, Fell, 2000
Brown, Choe, Shanahan, Czeisler, 1997
Brown, Choe, Shanahan, Czeisler, 1997
Bueno, 2007
Bugbuster Promoter 1
Bugbuster Promoter 2
Bugbuster Standard Virtual Biological Machine
Bugenhagen 2010
Butera, Rinzel, Smith II 1999
Butera, Rinzel, Smith, 1999
Calzone, Thieffry, Tyson, Novak, 2007
Campbell, Chandra, 2006
Cardiovascular Circulation
Cardiovascular Circulation DVad
Cardiovascular Circulation IVad
Cardiovascular Circulation Systemic
Cardiovascular Circulation Westkessel
Cardiovascular Circulation Westkessel
Cardiovascular Circulation Windkessel
Carro, Rodriguez, Laguna, Pueyo (2011)
Carro, Rodriguez, Laguna, Pueyo (2011)
Carro, Rodriguez, Laguna, Pueyo (2011)
Cartwright, Husain, 1986
Cartwright, Husain, 1986
cat flatmap
Cell viability models for tissue exposed to thermal ablation temperatures.
cellLib
CellML 2.0 testing
CFTR
Chang, Fujita, 1999
Chang, Fujita, 1999
Chang, Fujita, 2001
Chang, Fujita, B, 1999
Chang, Fujita, B, 1999
Chassagnole, Rais, Quentin, Fell, Mazat, 2001
Chauhan, Legewie, Westermark, Lorenzen and Herzel, 2008
Chay, 1997
Chay, Lee, Fan, 1995
Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
Chen, Calzone, Csikasznagy, Cross, Novak, Tyson, 2004
Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
Chen, Csikasz-Nagy, Gyorffy, Val, Novak, Tyson, 2000
Chen, Popel, 2006
Chen, Popel, 2006
Chen, Popel, 2007
Cheng, Brown, Loeb, 2000
Ciliberto, Novak, Tyson, 2003
Ciliberto, Novak, Tyson, 2003
Ciliberto, Petrus, Tyson, Sible, 2003
Ciliberto, Petrus, Tyson, Sible, 2003
Ciliberto, Tyson, 2000
Clancy, Rudy, 2001
Clancy, Rudy, 2002
Cloutier 2009
Cloutier Wellstead 2009
CMISS active contraction models
Colegrove, Albrecht, Friel, 2000
Combine Archive Example
Computational analysis of the human sinus node action potential: model development and effects of mutations
Computational analysis of the human sinus node action potential
Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal
Conradie, Bruggeman, Ciliberto, Csikasz-Nagy, Novak, Westerhoff and Snoep, 2010
Cooling, Hunter, Crampin, 2007
Cooling, Hunter, Crampin, 2009
Cooling, Hunter, Crampin, Cellml, 2008
Core Domains Principled Model Example
Corrias, Buist, 2007
Corrias, Buist, 2008
Cortassa et al (2006) ECME model
Cortassa, Aon, Marban, Winslow, Orourke, 2003
Cortassa, Aon, Winslow, Orourke, 2004
Costa, Holmes, Mcculloch, 2001
Courtemanche, Ramirez, and Nattel model under atrial fibrillation
Courtemanche, Ramirez, Nattel, 1998
Covering a Broad Dynamic Range: Information Processing at the Erythropoietin Receptor
Cronwright, Rohwer, Prior, 2002
Csilkasz-Nagy 2006
Cui, Kaandorp, 2006
Cui, Kaandorp, 2006
Cui, Kaandorp, 2008
Cui, Kaandorp, Lloyd, 2008
Curien, Ravanel, Dumas, 2003
Dairy cow flatmap
Dairy cow flatmap
Dash, Bassingthwaighte, 2004
David Cumin PhD Model
Davies isAP 2012
Dawson, Lea, Irvine, 2003
Decker 2009
Decker 2009
Deforming Heart
Degradation of Bugbuster RNA 1
Degradation of Bugbuster RNA 2
Degradation of ElectrEcoBlu RNA 1
Degradation of ElectrEcoBlu RNA 2
Degradation of GFP
Degradation of IC
Degradation of PhzM
Degradation of PhzS
Degradation of PYO
Degradation of spaK
Degradation of spaKactive
Degradation of spaR
Degradation of spaRactive
Degradation of TF
Degradation of TFS
Delta-Notch Intercellular Signalling
Delta-Notch Intercellular Signalling
Demir, Clark, Giles, 1999
Demir, Clark, Giles, Murphey, 1994
Demiray, 1981
Dempsher, Gann, Phair, 1984
Depaor, Timmons, 1986
Dependence of the period on the rate of protein degradation in minimal models for circadian oscillations
Dephosphorylation of spaKactive
Dephosphorylation of spaRactive
Deterministic Nonperiodic Flow
Devries, Sherman, 2000
Devries, Sherman, 2001
Deyoung, Keizer, 1992
Diabetes
Diffusion
Difrancesco, Noble, 1985
difrancesco_noble_1985
Dijkstra, Neal, Beever and France, 1992
Dixit, Perelson, 2004
Dokos, Celler, Lovell, 1996
Dokos, Celler, Lovell, B, 1996
Dougherty, Wright, Yew, 2005
Drouhard, Roberge, 1987
Dumaine, Towbin, Brugada, Vatta, Nesterenko, Nesterenko, Brugada, Brugada, Antzelevitch, 1999
Dupont Berridge Goldbeter 1991
Dupont Goldbeter 1992
Dynamics of amino acid metabolism of primary human liver cells in 3D bioreactors
Dynamics of amino acid metabolism of primary human liver cells in 3D bioreactors
Earm, Noble, 1990
Ebihara, Johnson, 1980
EColi Chassis
Edwards, 2008
Edwards, 2010
Egli, Bertram, Sellix, Freeman, 2004
ElectrEcoBlu Promoter 1
ElectrEcoBlu Promoter 2
ElectrEcoBlu Standard Virtual Biological Machine
Elowitz, Leibler, 2000
EMBC 2013 Tutorial - Noble 1962 reproducibility
Enciso, Sontag, 2004
Endresen, 1996
Epithelial Transport
Eskandari, Wright, Loo 2005
Eskandari, Wright, Loo 2005
Espinosa, 1998
Evans, Errington, Shelly, Feeney, Chapman, Godfrey, Smith, Chappell, 2004
Example bond graph models
Fabbri et al. based composite SAN model
Faber, Rudy, 2000
Faber, Rudy, 2000 and Tong, Ghouri, Taggart, 2014
Fall, Keizer, 2001
Fall, Keizer, 2001
Fallon, Lauffenburger, 2000
Farhy, Bowers, Veldhuis, 2007
Faville, Pullan, Sanders, Koh, Lloyd, Smith, 2009
Faville, Pullan, Sanders, Smith, 2008
FCU_adenylylCyclase
FCU_ExcitationContraction_Coupling
Feedback control of T-cell receptor activation
Fenton, Karma, 1998
Fenton, Karma, 1998
Fenton, Karma, 2006
FieldML example - a simple mesh
Fink, Noble, Virag, Varro, Giles, 2008
Fink, Slepchenko, Loew, 1999
Fink, Slepchenko, Loew, 1999
Fink, Slepchenko, Moraru, Watras, Schaff, Loew, 2000
Fink, Slepchenko, Moraru, Watras, Schaff, Loew, 2000
Fitzhugh, 1961
Flynn, Green, Pedley, Boxer, Dearling, Watson, Boden, Begent, 2002
Fohlmeister, Miller, 1997
Formation of IC
Formation of PYO
Formation of TFS
Fox, Mcharg, Gilmour, 2002
Fridlyand, Tamarina, Philipson, 2003
Friel, 1995
Friel, 1995
FTU Heart
Fujita, Toyoshima, Uda, Ozaki, Kubota and Kuroda 2010
Gall, Susa, 1999
Gardner, Dolnik, Collins, 1998
Garmendia-Torres, Goldbeter and Jacquet 2007
Garny, Kohl, Hunter, Boyett, Noble, 2003
Gasser, Ogden, Holzapfel, 2006
Gattoni 2016
Generic cat bladder scaffold
Generic human bladder scaffold
Generic human brainstem scaffold
Generic human colon scaffold
Generic human heart scaffold
Generic human lung scaffold
Generic human stomach scaffold
Generic Mouse Bladder Scaffold
Generic mouse brainstem scaffold
Generic mouse colon scaffold
Generic mouse heart scaffold
Generic mouse lung scaffold
Generic mouse stomach scaffold
Generic Pig Bladder Scaffold
Generic pig colon scaffold
Generic pig heart scaffold
Generic rat bladder scaffold
Generic rat brainstem scaffold
Generic rat heart scaffold
Generic rat lung scaffold
Generic rat stomach scaffold
Gerard and Goldbeter 2009
Gerard and Goldbeter 2009
Gerstner,Kistler,2002
get-library
Gilbert, Heiner, Rosser, Fulton, Gu, Trybilo, 2007
Glucose Transport Model (Thorsen)
Glucose Uptake in Enterocyte
GLUT
Goforth, Bertram, Khan, Zhang, Sherman, Satin, 2002
Goldbeter 2006
Goldbeter Dupont Berridge 1990
Goldbeter Dupont Berridge 1990
Goldbeter, 1991
Goldbeter, 1995
Goldbeter, Gonze and Pourquie 2007
Goldbeter, Pourquie, 2008
Gonzalezheydrich, Steingard, Kohane, 1994
Goodwin, 1965
Grandi et al. 2011 Atrial Action Potential and Ca2+ Model
Grandi, Pasqualini and Bers, 2010
Grange 2001
Greenstein, Wu, Po, Tomaselli, Winslow, 2000
Gross and Hopfer, 1998
Gross and Hopfer, 1999
Grossman, Feinberg, Kuznetsov, Dimitrov, Paul, 1998
Guccione, Mcculloch, Waldman, 1991
Gupta, Aslakson, Gurbaxani, Vernon, 2007
Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
Guyton, Aldosterone, 2008
Guyton, Angiotensin, 2008
Guyton, Antidiuretic, Hormone, 2008
Guyton, Atrial, Natriuretic, Peptide, 2008
Guyton, Autonomics, 2008
Guyton, Capillary, Dynamics, 2008
Guyton, Circulatory, Dynamics, 2008
Guyton, Electrolytes, 2008
Guyton, Full cardiovascular circulation model
Guyton, Heart Hypertrophy or Deterioration, 2008
Guyton, Heart, Rate, And, Stroke, Volume, 2008
Guyton, Kidney, 2008
Guyton, Muscle, Blood, Flow, Control, 2008
Guyton, Muscle, Oxygen, Delivery, 2008
Guyton, Non, Muscle, Blood, Flow, Control, 2008
Guyton, Non, Muscle, Oxygen, Delivery, 2008
Guyton, Pulmonary, Fluid, Dynamics, 2008
Guyton, Pulmonary, Oxygen, Uptake, 2008
Guyton, Red, Cells, And, Viscosity, 2008
Guyton, Stress, Relaxation, 2008
Guyton, Thirst, Drinking, And, Salt, Appetite, 2008
Guyton, Volume, Receptors, 2008
H+-ATPase (proton pump)
Hai and Murphy 1988
Halloy, Bernard, Loussouarn, Goldbeter, 2002
Han 2019 - Solving a century-old conundrum underlying cardiac force-length relations
Harrington, 2009
Hatakeyama, Kimura, Naka, Kawasaki, Yumoto, Ichikawa, Kim, Saito, Saeki, Shirouzu, Yokoyama, Konagaya, 2003
Hatzimanikatis, Lee, Bailey, 1999
Haugh, 2004
Heart Model
Heijman et al. 2011
Heinze, Keener, Midgley, 1998
Heldt 2002
Herz, Bonhoeffer, Anderson, May, Nowak, 1996
Heyd, Drew, 2003
HH Sodium Current model for estimation task
Hilgemann, Noble, 1987
Hill, 1972 - a model of feto-maternal oxygen exchange
Hinch, Greenstein, Tanskanen, Xu, Winslow, 2004
Hodgkin & Huxley (1952) model
Hodgkin, Huxley, 1952
Hoefnagel, Starrenburg, Martens, Hugenholtz, Kleerebezem, Vanswam, Bongers, Westerhoff, Snoep, 2002
Holmes 2006
Hornberg, Binder, Bruggeman, Schoeberl, Heinrich, Westerhoff, 2005
Houart, Dupont and Goldbeter 1999
Huang, Ferrell, 1996
Human atrial cell models for investigating TBX5/PITX2 insufficiency-induced atrial fibrillation
human flatmap
human flatmap
Human Left Ventricle
Human Stomach Scaffold
Human whole-body scaffold
Human whole-body scaffold with embedded organs
Human whole-body with embedded organs using automatic workflow for inserting the organs
Hund, Rudy, 2004
Hund, Rudy, 2004
Hunt, Tilunaite, Bass, Soeller, Roderick, Rajagopal, Crampin
Hunter, Mcculloch, Terkeurs, 1998
Hunter, Mcnaughton, Noble, 1975
Hunter, Smaill, Hunter, 1995
Hynne, Dano, Sorensen, 2001
Iancu 2007
Iber, Maini, 2002
Ikeda BMadonna QKDB
Ikeda BMadonna QKDB
Improvement of metabolic performance of primary hepatocytes in hyperoxic cultures by vitamin C in a novel small-scale bioreactor
Imtiaz_IP3_2002
Inada 2009
Incorporation of sarcolemmal calcium transporters into the Shorten et al. (2007) model of skeletal muscle
Inner medullary lactate production and accumulation: a vasa recta model, S. Randall Thomas, 2000
Interaction of glycolysis and mitochondrial respiration in metabolic oscillations of pancreatic islets, Richard Bertram, Leslie S. Satin, Morten Gram Pedersen, Dan S. Luciani, and Arthur Sherman, 2007
Intercellular calcium waves mediated by diffusion of inositol trisphosphate: a two-dimensional model. J. Sneyd, B.T. Wetton, A.C. Charles and M.J. Sanderson, 1995
International, Si, Units, 2006
Interpolation field over mesh with uncertain nodal values
Interstitial Cell of Cajal Network Imaging Data
Iribe, Kohl, Noble, 2006
Irvine, Jafri, Winslow, 1999
Itskov, Ehret, Mavrilas, 2006
Iyer, Hajjar, Armoundas, 2007
Iyer, Mazhari, Winslow, 2004
Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991
Jafri, Rice, Winslow, 1998
Jafri, Rice, Winslow, 1998
Jelic, Cupic, Kolaranic, 2005
Joseph, Zavros, Merchant, Kirschner, 2003
Kapela, A. Bezerianos, A. and Tsoukias, N. M. 2008
Karagiannis, Popel, 2004
Karagiannis, Popel, 2006
Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004
Keener, 2001
Keizer, Levine, 1996
Kernik et al. 2019
Kesmir, Deboer, 1999
Kholodenko, Demin, Moehren, Hoek, 1999
Kholodenko, Demin, Moehren, Hoek, 1999
Kinetics of the Reverse Mode of the Na+/Glucose Cotransporter, Eskandari, Wright, Loo, 2005
Kirschner, Panetta, 1998
Kirschner, Webb, 1996
Kneller, Ramirez, Chartier, Courtemanche, Nattel, 2002
Koivumäki, Korhonen, Tavi 2011 Atrial AP model
Koivumaki,2009
Komarova 2005
Komarova, Smith, Dixon, Sims and Wahl, 2003
Komarova, Wodarz, 2003
Kongas, Vanbeek, 2001
Korzeniewski, Zoladz, 2001
Kroll, 2000
Kurata, Hisatome, Imanishi, Shibamoto, 2002
Kyrylov, Severyanova, Vieira, 2005
Lambeth, Kushmerick, 2002
Land et al. 2012
Landesberg, Sideman, 1994
Large Scale Left Ventricular Shape Atlas Using Automated Model Fitting to Contours
Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2+induced Ca2+ release
Lebeau, Robson, Mckinnon, Donald, Sneyd, 1997
Lebeau, Yule, Groblewski, Sneyd, 1999
Lees_Green_2014
Leloup, Goldbeter, 1998
Leloup, Goldbeter, 2003
Leloup, Goldbeter, 2004
Leloup, Gonze, Goldbeter, 1999
Lemaire, Tobin, Greller, Cho, Suva, 2004
Lemon, Gibson, Bennett, 2003
Lenbury, Pacheenburawana, 1991
Lenbury, Pornsawad, 2005
Lenbury, Ruktamatakul, Amornsamarnkul, 2001
Li, Bertram and Rinzel, 1996
Li, Bertram and Rinzel, 1996
Li, Kuang, Mason, 2006
Li, Rinzel, 1994
Li, Smith, 2009
Lindblad, Murphey, Clark, Giles, 1996