Location: SLC transporters @ 65898d4880ef / src / sim_SGLT1.py

Author:
Weiwei Ai <wai484@aucklanduni.ac.nz>
Date:
2024-10-21 14:11:01+13:00
Desc:
Modify SGLT1_BG_fast.cellml to allow users to modify test_volt and Glco in the simulation tab.
Permanent Source URI:
https://models.fieldml.org/workspace/b65/rawfile/65898d4880efb52227f2860ddafb4c8cde585d47/src/sim_SGLT1.py
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import os
import sys
# Get the directory containing the current file
current_dir = os.path.dirname(os.path.abspath(__file__))
# Append the 'sedCellMLPy' directory to the system path
sys.path.append(os.path.join(current_dir, '../sedCellMLPy/'))
from sedCollector import read_sedml
from sedExecutor import exec_sed_doc
from pathlib import Path

path_='../Electrogenic cotransporter/CellMLV2/'
working_dir = os.path.join(current_dir, path_)
sedFiles=['SGLT1_ss.sedml','SGLT1_ss_fast.sedml','SGLT1_BG_FIG10.sedml','SGLT1_BG_ss.sedml']

for sedFile in sedFiles:
    full_path=os.path.join(current_dir, path_,sedFile)
    doc=read_sedml(full_path)
    exec_sed_doc(doc, working_dir, working_dir, rel_out_path='sim_results', external_variables_info={},
                  external_variables_values=[],ss_time={},cost_type=None)