- Author:
- David Nickerson <david.nickerson@gmail.com>
- Date:
- 2021-09-15 23:47:07+12:00
- Desc:
- Updating BR model with SED-ML for the default periodic stimulus simulation experinment
- Permanent Source URI:
- https://models.fieldml.org/workspace/a1/rawfile/faec014e4ba6524541fe8093d6bf343861caacfd/models/1962_noble/experiments/free-running.xml
<?xml version="1.0" encoding="iso-8859-1"?>
<model
name="1962_noble_freeRunning"
cmeta:id="1962_noble_freeRunning"
xmlns="http://www.cellml.org/cellml/1.1#"
xmlns:cellml="http://www.cellml.org/cellml/1.1#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:xlink="http://www.w3.org/1999/xlink">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet" />
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2004-12-21</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Bioengineering Institute, The University of Auckland.
</dc:publisher>
</rdf:Description>
<rdf:Description rdf:about="#1962_noble_freeRunning">
<dc:title>
Free running version of Noble (1962) Purkinje fibre model
</dc:title>
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
This CellML file describes the boundary conditions used with the
Noble (1962) cardiac Purkinje fibre electrophysiology model to
produce a free running (pacemaker) version of the model.
</rdf:value>
<dc:creator rdf:parseType="Resource">
<vCard:FN>David Nickerson</vCard:FN>
</dc:creator>
</cmeta:comment>
<cs:simulation>
<rdf:Description rdf:ID="simulation">
<cs:multistepMethod>bdf</cs:multistepMethod>
<cs:iterationMethod>functional</cs:iterationMethod>
<cs:boundIntervals rdf:parseType="Collection">
<rdf:Description>
<cs:boundVariable>
<rdf:Description rdf:about="#time"/>
</cs:boundVariable>
<cs:maximumStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.01
</cs:maximumStepSize>
<cs:tabulationStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
1.0
</cs:tabulationStepSize>
<cs:startingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0
</cs:startingValue>
<cs:endingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
3000
</cs:endingValue>
</rdf:Description>
</cs:boundIntervals>
</rdf:Description>
</cs:simulation>
</rdf:Description>
</rdf:RDF>
<import xlink:href="../../common/units.xml">
<units name="ms" units_ref="ms"/>
<units name="uA_per_mmsq" units_ref="uA_per_mmsq"/>
<units name="uA_per_mmcu" units_ref="uA_per_mmcu"/>
<units name="mV" units_ref="mV"/>
<units name="mS_per_mmsq" units_ref="mS_per_mmsq"/>
<units name="per_mm" units_ref="per_mm"/>
</import>
<import xlink:href="../1962_noble.xml">
<component name="model" component_ref="interface"/>
</import>
<component name="time" cmeta:id="time_component">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#time_component">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
The actual definition of the time variable.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<variable name="time" cmeta:id="time" initial_value="0.0" public_interface="out" units="ms"/>
</component>
<connection>
<map_components component_1="model" component_2="time"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<component name="stimulus_protocol" cmeta:id="stimulus_protocol">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#stimulus_protocol">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
Here we define the stimulus protocol for the simulation.
In this case there is no stimulus applied.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<variable name="IStim" initial_value="0.0" public_interface="out" units="uA_per_mmsq"/>
</component>
<connection>
<map_components component_1="model" component_2="stimulus_protocol"/>
<map_variables variable_1="I_stim" variable_2="IStim"/>
</connection>
<component name="parameters" cmeta:id="parameters">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#parameters">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
Here we define the parameter values for this simulation. g_K_add
is set to zero to allow the free running (self-activating) version
of the model.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<variable name="g_K_add" initial_value="0.0" public_interface="out" units="mS_per_mmsq"/>
</component>
<connection>
<map_components component_1="model" component_2="parameters"/>
<map_variables variable_1="g_K_add" variable_2="g_K_add"/>
</connection>
</model>
