- Author:
- David Nickerson <david.nickerson@gmail.com>
- Date:
- 2021-09-16 01:07:43+12:00
- Desc:
- adding BR variant comparison to jupyter notebook
- Permanent Source URI:
- https://models.fieldml.org/workspace/a1/rawfile/faebb18f1db53a7d1f8f4e7fc588d660d45744c0/sed-ml/BR-INa-variants-standalone.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://www.biomodels.net/sed-ml" level="1" version="1">
<listOfSimulations>
<uniformTimeCourse id="simulation"
initialTime="0"
outputStartTime="0"
outputEndTime="1500"
numberOfPoints="1500">
<algorithm kisaoID="KISAO:0000019" />
</uniformTimeCourse>
<!--
FIXME: need to reference IVOI - can't go here though...
-->
</listOfSimulations>
<listOfModels>
<model id="BR"
language="urn:sedml:language:cellml"
source="http://models.cellml.org/workspace/a1/@@rawfile/7bc23d0526e23d54d45e1fb7deda0f55d7f0f086/models/1977_beeler/experiments/periodic-stimulus.xml" />
<model id="BREJ"
language="urn:sedml:language:cellml"
source="http://models.cellml.org/workspace/a1/@@rawfile/7bc23d0526e23d54d45e1fb7deda0f55d7f0f086/models/1977_beeler/experiments/1980_ebihara_johnson.xml" />
<model id="BRDR"
language="urn:sedml:language:cellml"
source="http://models.cellml.org/workspace/a1/@@rawfile/7bc23d0526e23d54d45e1fb7deda0f55d7f0f086/models/1977_beeler/experiments/1987_drouhard_roberge.xml" />
</listOfModels>
<listOfTasks>
<task id="BRtask" modelReference="BR" simulationReference="simulation" />
<task id="BREJtask" modelReference="BREJ" simulationReference="simulation" />
<task id="BRDRtask" modelReference="BRDR" simulationReference="simulation" />
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="BRtime" name="BR time">
<listOfVariables>
<variable id="BRtime_variable" taskReference="BRtask" target="/cellml:model/cellml:component[@name='time']/cellml:variable[@name='time']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BRtime_variable </ci>
</math>
</dataGenerator>
<dataGenerator id="BRVm" name="BR Vm">
<listOfVariables>
<variable id="BRVm_variable" taskReference="BRtask" target="/cellml:model/cellml:component[@name='exposed_variables']/cellml:variable[@name='Vm']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BRVm_variable </ci>
</math>
</dataGenerator>
<dataGenerator id="BREJtime" name="BREJ time">
<listOfVariables>
<variable id="BREJtime_variable" taskReference="BREJtask" target="/cellml:model/cellml:component[@name='time']/cellml:variable[@name='time']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BREJtime_variable </ci>
</math>
</dataGenerator>
<dataGenerator id="BREJVm" name="BREJ Vm">
<listOfVariables>
<variable id="BREJVm_variable" taskReference="BREJtask" target="/cellml:model/cellml:component[@name='fast_sodium_current']/cellml:variable[@name='V']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BREJVm_variable </ci>
</math>
</dataGenerator>
<dataGenerator id="BRDRtime" name="BRDR time">
<listOfVariables>
<variable id="BRDRtime_variable" taskReference="BRDRtask" target="/cellml:model/cellml:component[@name='time']/cellml:variable[@name='time']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BRDRtime_variable </ci>
</math>
</dataGenerator>
<dataGenerator id="BRDRVm" name="BRDR Vm">
<listOfVariables>
<variable id="BRDRVm_variable" taskReference="BRDRtask" target="/cellml:model/cellml:component[@name='fast_sodium_current']/cellml:variable[@name='V']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> BRDRVm_variable </ci>
</math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" name="Action Potentials">
<listOfCurves>
<curve id="curve_0" logX="false" logY="false" xDataReference="BRtime" yDataReference="BRVm" />
<curve id="curve_1" logX="false" logY="false" xDataReference="BREJtime" yDataReference="BREJVm" />
<curve id="curve_2" logX="false" logY="false" xDataReference="BRDRtime" yDataReference="BRDRVm" />
</listOfCurves>
</plot2D>
</listOfOutputs>
</sedML>
