- Author:
- David Nickerson <david.nickerson@gmail.com>
- Date:
- 2021-09-16 00:41:19+12:00
- Desc:
- Updating Noble 1962 model:
* Exposing the membrane potential to the top-level model;
* adding SED-ML for the paced and pacemaker variants of the model.
Using OpenCOR Snapshot release 2021-09-14.
- Permanent Source URI:
- https://models.fieldml.org/workspace/a1/rawfile/f954e59183314cd37f86c8832dc81317d01c8ec5/dojo-presentation/js/dojo/dojox/data/AtomReadStore.js
dojo.provide("dojox.data.AtomReadStore");
dojo.require("dojo.data.util.simpleFetch");
dojo.require("dojo.data.util.filter");
dojo.require("dojo.date.stamp");
dojo.experimental("dojox.data.AtomReadStore");
dojo.declare("dojox.data.AtomReadStore", null, {
// summary:
// A read only data store for Atom XML based services or documents
// description:
// A data store for Atom XML based services or documents. This store is still under development
// and doesn't support wildcard filtering yet. Attribute filtering is limited to category or id.
constructor: function(/* object */ args) {
// summary:
// Constructor for the AtomRead store.
// args:
// An anonymous object to initialize properties. It expects the following values:
// url: The url to a service or an XML document that represents the store
// unescapeHTML: A boolean to specify whether or not to unescape HTML text
// sendQuery: A boolean indicate to add a query string to the service URL
if(args){
this.url = args.url;
this.rewriteUrl = args.rewriteUrl;
this.label = args.label || this.label;
this.sendQuery = (args.sendQuery || args.sendquery || this.sendQuery);
this.unescapeHTML = args.unescapeHTML;
}
if(!this.url){
throw new Error("AtomReadStore: a URL must be specified when creating the data store");
}
},
//Values that may be set by the parser.
//Ergo, have to be instantiated to something
//So the parser knows how to set them.
url: "",
label: "title",
sendQuery: false,
unescapeHTML: false,
/* dojo.data.api.Read */
getValue: function(/* item */ item, /* attribute || attribute-name-string */ attribute, /* value? */ defaultValue){
// summary:
// Return an attribute value
// description:
// 'item' must be an instance of an object created by the AtomReadStore instance.
// Accepted attributes are id, subtitle, title, summary, content, author, updated,
// published, category, link and alternate
// item:
// An item returned by a call to the 'fetch' method.
// attribute:
// A attribute of the Atom Entry
// defaultValue:
// A default value
// returns:
// An attribute value found, otherwise 'defaultValue'
this._assertIsItem(item);
this._assertIsAttribute(attribute);
this._initItem(item);
attribute = attribute.toLowerCase();
//If the attribute has previously been retrieved, then return it
if(!item._attribs[attribute] && !item._parsed){
this._parseItem(item);
item._parsed = true;
}
var retVal = item._attribs[attribute];
if(!retVal && attribute=="summary") {
var content = this.getValue(item, "content");
var regexp = new RegExp("/(<([^>]+)>)/g", "i");
var text = content.text.replace(regexp,"");
retVal = {
text: text.substring(0, Math.min(400, text.length)),
type: "text"
};
item._attribs[attribute] = retVal;
}
if(retVal && this.unescapeHTML){
if ((attribute == "content" || attribute == "summary" || attribute == "subtitle") && !item["_"+attribute+"Escaped"]) {
retVal.text = this._unescapeHTML(retVal.text);
item["_"+attribute+"Escaped"] = true;
}
}
return retVal ? dojo.isArray(retVal) ? retVal[0]: retVal : defaultValue;
},
getValues: function(/* item */ item, /* attribute || attribute-name-string */ attribute){
// summary:
// Return an attribute value
// description:
// 'item' must be an instance of an object created by the AtomReadStore instance.
// Accepted attributes are id, subtitle, title, summary, content, author, updated,
// published, category, link and alternate
// item:
// An item returned by a call to the 'fetch' method.
// attribute:
// A attribute of the Atom Entry
// returns:
// An array of values for the attribute value found, otherwise 'defaultValue'
this._assertIsItem(item);
this._assertIsAttribute(attribute);
this._initItem(item);
attribute = attribute.toLowerCase();
//If the attribute has previously been retrieved, then return it
if(!item._attribs[attribute]){
this._parseItem(item);
}
var retVal = item._attribs[attribute];
return retVal ? ((retVal.length !== undefined && typeof(retVal) !== "string") ? retVal : [retVal]) : undefined;
},
getAttributes: function(/* item */ item) {
// summary:
// Return an array of attribute names
// description:
// 'item' must be have been created by the AtomReadStore instance.
// tag names of child elements and XML attribute names of attributes
// specified to the element are returned along with special attribute
// names applicable to the element including "tagName", "childNodes"
// if the element has child elements, "text()" if the element has
// child text nodes, and attribute names in '_attributeMap' that match
// the tag name of the element.
// item:
// An XML element
// returns:
// An array of attributes found
this._assertIsItem(item);
if(!item._attribs){
this._initItem(item);
this._parseItem(item);
}
var attrNames = [];
for(var x in item._attribs){
attrNames.push(x);
}
return attrNames; //array
},
hasAttribute: function(/* item */ item, /* attribute || attribute-name-string */ attribute){
// summary:
// Check whether an element has the attribute
// item:
// 'item' must be created by the AtomReadStore instance.
// attribute:
// An attribute of an Atom Entry item.
// returns:
// True if the element has the attribute, otherwise false
return (this.getValue(item, attribute) !== undefined); //boolean
},
containsValue: function(/* item */ item, /* attribute || attribute-name-string */ attribute, /* anything */ value){
// summary:
// Check whether the attribute values contain the value
// item:
// 'item' must be an instance of a dojox.data.XmlItem from the store instance.
// attribute:
// A tag name of a child element, An XML attribute name or one of
// special names
// returns:
// True if the attribute values contain the value, otherwise false
var values = this.getValues(item, attribute);
for(var i = 0; i < values.length; i++){
if((typeof value === "string")){
if(values[i].toString && values[i].toString() === value){
return true;
}
}else if (values[i] === value){
return true; //boolean
}
}
return false;//boolean
},
isItem: function(/* anything */ something){
// summary:
// Check whether the object is an item (XML element)
// item:
// An object to check
// returns:
// True if the object is an XML element, otherwise false
if(something && something.element && something.store && something.store === this){
return true; //boolean
}
return false; //boolran
},
isItemLoaded: function(/* anything */ something){
// summary:
// Check whether the object is an item (XML element) and loaded
// item:
// An object to check
// returns:
// True if the object is an XML element, otherwise false
return this.isItem(something); //boolean
},
loadItem: function(/* object */ keywordArgs){
// summary:
// Load an item (XML element)
// keywordArgs:
// object containing the args for loadItem. See dojo.data.api.Read.loadItem()
},
getFeatures: function() {
// summary:
// Return supported data APIs
// returns:
// "dojo.data.api.Read" and "dojo.data.api.Write"
var features = {
"dojo.data.api.Read": true
};
return features; //array
},
getLabel: function(/* item */ item){
// summary:
// See dojo.data.api.Read.getLabel()
if((this.label !== "") && this.isItem(item)){
var label = this.getValue(item,this.label);
if(label && label.text){
return label.text;
}else if (label){
return label.toString();
}else{
return undefined;
}
}
return undefined; //undefined
},
getLabelAttributes: function(/* item */ item){
// summary:
// See dojo.data.api.Read.getLabelAttributes()
if(this.label !== ""){
return [this.label]; //array
}
return null; //null
},
getFeedValue: function(attribute, defaultValue){
// summary:
// Non-API method for retrieving values regarding the Atom feed,
// rather than the Atom entries.
var values = this.getFeedValues(attribute, defaultValue);
if(dojo.isArray(values)){
return values[0];
}
return values;
},
getFeedValues: function(attribute, defaultValue){
// summary:
// Non-API method for retrieving values regarding the Atom feed,
// rather than the Atom entries.
if(!this.doc){
return defaultValue;
}
if(!this._feedMetaData){
this._feedMetaData = {
element: this.doc.getElementsByTagName("feed")[0],
store: this,
_attribs: {}
};
this._parseItem(this._feedMetaData);
}
return this._feedMetaData._attribs[attribute] || defaultValue;
},
_initItem: function(item){
// summary:
// Initializes an item before it can be parsed.
if(!item._attribs){
item._attribs = {};
}
},
_fetchItems: function(request, fetchHandler, errorHandler) {
// summary:
// Retrieves the items from the Atom XML document.
var url = this._getFetchUrl(request);
if(!url){
errorHandler(new Error("No URL specified."));
return;
}
var localRequest = (!this.sendQuery ? request : null); // use request for _getItems()
var _this = this;
var docHandler = function(data){
_this.doc = data;
var items = _this._getItems(data, localRequest);
var query = request.query;
if(query) {
if(query.id) {
items = dojo.filter(items, function(item){
return (_this.getValue(item, "id") == query.id);
});
} else if(query.category){
items = dojo.filter(items, function(entry) {
var cats = _this.getValues(entry, "category");
if(!cats){
return false;
}
return dojo.some(cats, "return item.term=='"+query.category+"'");
});
}
}
if (items && items.length > 0) {
fetchHandler(items, request);
}
else {
fetchHandler([], request);
}
};
if (this.doc) {
docHandler(this.doc);
}else{
var getArgs = {
url: url,
handleAs: "xml"//,
// preventCache: true
};
var getHandler = dojo.xhrGet(getArgs);
getHandler.addCallback(docHandler);
getHandler.addErrback(function(data){
errorHandler(data, request);
});
}
},
_getFetchUrl: function(request){
if(!this.sendQuery){
return this.url;
}
var query = request.query;
if(!query){
return this.url;
}
if(dojo.isString(query)){
return this.url + query;
}
var queryString = "";
for(var name in query){
var value = query[name];
if(value){
if(queryString){
queryString += "&";
}
queryString += (name + "=" + value);
}
}
if(!queryString){
return this.url;
}
//Check to see if the URL already has query params or not.
var fullUrl = this.url;
if(fullUrl.indexOf("?") < 0){
fullUrl += "?";
}else{
fullUrl += "&";
}
return fullUrl + queryString;
},
_getItems: function(document, request) {
// summary:
// Parses the document in a first pass
if(this._items){
return this._items;
}
var items = [];
var nodes = [];
if(document.childNodes.length < 1){
this._items = items;
console.log("dojox.data.AtomReadStore: Received an invalid Atom document. Check the content type header");
return items;
}
var feedNodes = dojo.filter(document.childNodes, "return item.tagName && item.tagName.toLowerCase() == 'feed'");
var query = request.query;
if(!feedNodes || feedNodes.length != 1){
console.log("dojox.data.AtomReadStore: Received an invalid Atom document, number of feed tags = " + (feedNodes? feedNodes.length : 0));
return items;
}
nodes = dojo.filter(feedNodes[0].childNodes, "return item.tagName && item.tagName.toLowerCase() == 'entry'");
if(request.onBegin){
request.onBegin(nodes.length);
}
for(var i = 0; i < nodes.length; i++){
var node = nodes[i];
if(node.nodeType != 1 /*ELEMENT_NODE*/){
continue;
}
items.push(this._getItem(node));
}
this._items = items;
return items;
},
close: function(/*dojo.data.api.Request || keywordArgs || null */ request){
// summary:
// See dojo.data.api.Read.close()
},
/* internal API */
_getItem: function(element){
return {
element: element,
store: this
};
},
_parseItem: function(item) {
var attribs = item._attribs;
var _this = this;
var text, type;
function getNodeText(node){
var txt = node.textContent || node.innerHTML || node.innerXML;
if(!txt && node.childNodes[0]){
var child = node.childNodes[0];
if (child && (child.nodeType == 3 || child.nodeType == 4)) {
txt = node.childNodes[0].nodeValue;
}
}
return txt;
}
function parseTextAndType(node) {
return {text: getNodeText(node),type: node.getAttribute("type")};
}
dojo.forEach(item.element.childNodes, function(node){
var tagName = node.tagName ? node.tagName.toLowerCase() : "";
switch(tagName){
case "title":
attribs[tagName] = {
text: getNodeText(node),
type: node.getAttribute("type")
}; break;
case "subtitle":
case "summary":
case "content":
attribs[tagName] = parseTextAndType(node);
break;
case "author":
var nameNode ,uriNode;
dojo.forEach(node.childNodes, function(child){
if(!child.tagName){
return;
}
switch(child.tagName.toLowerCase()){
case "name":nameNode = child;break;
case "uri": uriNode = child; break;
}
});
var author = {};
if(nameNode && nameNode.length == 1){
author.name = getNodeText(nameNode[0]);
}
if(uriNode && uriNode.length == 1){
author.uri = getNodeText(uriNode[0]);
}
attribs[tagName] = author;
break;
case "id": attribs[tagName] = getNodeText(node); break;
case "updated": attribs[tagName] = dojo.date.stamp.fromISOString(getNodeText(node) );break;
case "published": attribs[tagName] = dojo.date.stamp.fromISOString(getNodeText(node));break;
case "category":
if(!attribs[tagName]){
attribs[tagName] = [];
}
attribs[tagName].push({scheme:node.getAttribute("scheme"), term: node.getAttribute("term")});
break;
case "link":
if(!attribs[tagName]){
attribs[tagName] = [];
}
var link = {
rel: node.getAttribute("rel"),
href: node.getAttribute("href"),
type: node.getAttribute("type")};
attribs[tagName].push(link);
if(link.rel == "alternate") {
attribs["alternate"] = link;
}
break;
default:
break;
}
});
},
_unescapeHTML : function(text) {
//Replace HTML character codes with their unencoded equivalents, e.g. ’ with '
text = text.replace(/’/m , "'").replace(/″/m , "\"").replace(/</m,">").replace(/>/m,"<").replace(/&/m,"&");
return text;
},
_assertIsItem: function(/* item */ item){
// summary:
// This function tests whether the item passed in is indeed an item in the store.
// item:
// The item to test for being contained by the store.
if(!this.isItem(item)){
throw new Error("dojox.data.AtomReadStore: Invalid item argument.");
}
},
_assertIsAttribute: function(/* attribute-name-string */ attribute){
// summary:
// This function tests whether the item passed in is indeed a valid 'attribute' like type for the store.
// attribute:
// The attribute to test for being contained by the store.
if(typeof attribute !== "string"){
throw new Error("dojox.data.AtomReadStore: Invalid attribute argument.");
}
}
});
dojo.extend(dojox.data.AtomReadStore,dojo.data.util.simpleFetch);
