Location: A review of cardiac cellular electrophysiology models @ ae7a0b93f4ee / tutorial / HH-to-N62-graphs.xml

Author:
David Nickerson <david.nickerson@gmail.com>
Date:
2021-09-16 01:20:40+12:00
Desc:
Upadte jupyter notebook with MNT and DFN comparison figure
Permanent Source URI:
https://models.fieldml.org/workspace/a1/rawfile/ae7a0b93f4ee5fda3d81ba97eb459f958b2819c9/tutorial/HH-to-N62-graphs.xml
Compare... Download Source 

<?xml version="1.0" encoding="iso-8859-1"?>
<rdf:RDF
        xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
        xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
        xmlns:bqs="http://www.cellml.org/bqs/1.0#"
        xmlns:dc="http://purl.org/dc/elements/1.1/"
        xmlns:dcterms="http://purl.org/dc/terms/"
        xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
        xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
        xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#">
  <rdf:Description rdf:ID="andre">
    <vCard:N rdf:parseType="Resource">
      <vCard:Family>Nickerson</vCard:Family>
      <vCard:Given>David</vCard:Given>
    </vCard:N>
    <vCard:EMAIL rdf:parseType="Resource">
      <rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
      <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
    </vCard:EMAIL>
    <vCard:ORG rdf:parseType="Resource">
      <vCard:Orgname>The University of Auckland</vCard:Orgname>
      <vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
    </vCard:ORG>
  </rdf:Description>
  <rdf:Description rdf:about="">
    <dc:creator rdf:resource="#andre"/>
    <dcterms:created rdf:parseType="Resource">
      <dcterms:W3CDTF>2009-07-07</dcterms:W3CDTF>
    </dcterms:created>
    <dc:publisher>
      Auckland Bioengineering Institute, The University of Auckland.
    </dc:publisher>
  </rdf:Description>
  <rdf:Description>
    <cg:graph>
      <rdf:Description rdf:ID="modified-HH-AP">
        <cg:title>Action Potentials</cg:title>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Potential (mV)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-V</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="modified-hh.xml#minus_V"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="modified-HH-currents">
        <cg:title>Membrane Currents</cg:title>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>INa</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="http://www.bioeng.nus.edu.sg/compbiolab/p3/cellml/components/INa.xml#INa"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>IK</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="IK.xml#IK"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>Ileak</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#008000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="http://www.bioeng.nus.edu.sg/compbiolab/p3/cellml/components/Ileak.xml#Ileak"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="modified-HH-gates">
        <cg:title>Gating Variables</cg:title>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Gate value ()</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>n</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="IK.xml#n"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>m</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="http://www.bioeng.nus.edu.sg/compbiolab/p3/cellml/components/INa.xml#m"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>h</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#008000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="http://www.bioeng.nus.edu.sg/compbiolab/p3/cellml/components/INa.xml#h"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="modified-HH-IK">
        <cg:title>Gating Variables</cg:title>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Conductance (mS/mm2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>gK1</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="IK.xml#gK1"/>
            </cg:y-variable>
          </rdf:Description>
          <rdf:Description>
            <cg:label>gK2</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:line-type rdf:datatype="http://www.w3.org/2001/XMLSchema#integer">1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="experiment.xml#time"/>
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="experiment.xml#simulation"/>
              <cg:variable rdf:resource="IK.xml#gK2"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
  </rdf:Description>
</rdf:RDF>