- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2022-07-01 10:35:06+12:00
- Desc:
- Updating channel species moles and IPR channel
- Permanent Source URI:
- https://models.fieldml.org/workspace/8ae/rawfile/11717e303df40bd009fbc67c3ea690002a7d3433/FCU_CaToolbox.m
tic;
[VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction();
toc;
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction()
% This is the "main function". In Matlab, things work best if you rename this function to match the filename.
[VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel();
end
function [algebraicVariableCount] = getAlgebraicVariableCount()
% Used later when setting a global variable with the number of algebraic variables.
% Note: This is not the "main method".
algebraicVariableCount =140;
end
% There are a total of 43 entries in each of the rate and state variable arrays.
% There are a total of 112 entries in the constant variable array.
%
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel()
[LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends();
% Create ALGEBRAIC of correct size
global algebraicVariableCount; algebraicVariableCount = getAlgebraicVariableCount();
% Initialise constants and state variables
[INIT_STATES, CONSTANTS] = initConsts;
% Set timespan to solve over
tspan = [0, 1e1];
% Set numerical accuracy options for ODE solver
options = odeset('RelTol', 1e-05, 'AbsTol', 1e-16, 'MaxStep', 1e-5);
% Solve model with ODE solver
[VOI, STATES] = ode15s(@(VOI, STATES)computeRates(VOI, STATES, CONSTANTS), tspan, INIT_STATES, options);
% Compute algebraic variables
[RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS);
ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI);
vlabels = { 'q_Ca_i in component environment (fmol)',...
'q_Ca_SR in component environment (fmol)',...
'q_IP3 in component environment (fmol)',...
};
[~, i_st, i_alg] = find_indices(vlabels, cellstr(LEGEND_CONSTANTS), cellstr(LEGEND_STATES), cellstr(LEGEND_ALGEBRAIC));
if i_st
plot_selected(i_st,VOI,STATES,'s',LEGEND_STATES,'STATES',ceil(sqrt(length(i_st))))
end
if i_alg
plot_selected(i_alg,VOI,ALGEBRAIC,'s',LEGEND_ALGEBRAIC,'ALGEBRAIC',ceil(sqrt(length(i_alg))))
end
% fluxes
flabs = {'v_R_IPR_main in component IPR (fmol_per_sec)',...
'v_leak in component Ca_leak (fmol_per_sec)',...
'v_Ca_i_SERCA in component SERCA (fmol_per_sec)'};
[~, ~, i_alg] = find_indices(flabs, cellstr(LEGEND_CONSTANTS), cellstr(LEGEND_STATES), cellstr(LEGEND_ALGEBRAIC));
% plot_selected(i_alg,VOI,ALGEBRAIC,'s',LEGEND_ALGEBRAIC,'EC FLUXES',ceil(sqrt(length(i_alg))))
if true
% convert v (fmol/s) to i (uA/uF)
F = 96485;
Cm = 6e-5; % Unit microF %0.001;
conv = 1e-9*F/Cm;
figure();
for j=1:length(flabs)
subplot(2,2,j)
plot(VOI, ALGEBRAIC(:,i_alg(j))*conv);
xlabel(LEGEND_VOI);
title(flabs(j));
if verLessThan('matlab','9.5')
suptitle('AP fluxes uA/uF')
else
sgtitle('AP fluxes uA/uF')
end
end
end
if false
% Ca conservation
Ca_labels = {'q_Ca_i in component environment (fmol)',...
'q_Ca_SR in component environment (fmol)',...
};
serca_ca = {};
[~, i_st, ~] = find_indices(Ca_labels, cellstr(LEGEND_CONSTANTS), cellstr(LEGEND_STATES), cellstr(LEGEND_ALGEBRAIC));
assert(length(Ca_labels)==length(i_st))
figure,
plot(VOI, sum(STATES(:,i_st),2));
title('sum Ca fmol (no gates)')
end
end
function [i_con, i_st, i_alg] = find_indices(labels, LEGEND_CONSTANTS, LEGEND_STATES, LEGEND_ALGEBRAIC)
% return the indices for the selected labels
all_legends = [LEGEND_CONSTANTS; LEGEND_STATES; LEGEND_ALGEBRAIC];
i_con = [];
for i = 1:length(labels)
i_con = [i_con; find(strcmp(labels{i},LEGEND_CONSTANTS))];
end
i_st = [];
for i = 1:length(labels)
i_st = [i_st; find(strcmp(labels{i},LEGEND_STATES))];
end
i_alg = [];
for i = 1:length(labels)
i_alg = [i_alg; find(strcmp(labels{i},LEGEND_ALGEBRAIC))];
end
if length(i_con) + length(i_st) + length(i_alg) < length(labels)
error('missing index');
end
end
function [] = plot_selected(ids,x,y,legend_x,legend_y,titlestr,ns)
istart = 1;
figure();
% plot stimuli
for i = 1:length(ids)
subplot(ns,ns,i)
plotting_x = x(istart:end);
plotting_y = y(istart:end,ids(i));
if isempty(plotting_y) % probably a constant scalar
plotting_y = repmat(y(ids(i)),2);
plotting_x = [x(istart), x(end)];
end
plot(plotting_x, plotting_y);
xlabel('time (s)');
str = split(legend_y(ids(i),:), ' ');
str = legend_y(ids(i),:);
l = legend(str);
set(l,'interpreter','none');
end
if verLessThan('matlab','9.5')
suptitle(titlestr)
else
sgtitle(titlestr)
end
end
function [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends()
LEGEND_STATES = ''; LEGEND_ALGEBRAIC = ''; LEGEND_VOI = ''; LEGEND_CONSTANTS = '';
LEGEND_CONSTANTS(:,1) = strpad('kappa_leak in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,2) = strpad('kappa_R_IPR_main in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,3) = strpad('kappa_R1_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,4) = strpad('kappa_R2_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,5) = strpad('kappa_R3_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,6) = strpad('kappa_R4_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,7) = strpad('kappa_R5_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,8) = strpad('kappa_R6_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,9) = strpad('kappa_R7_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,10) = strpad('kappa_R8_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,11) = strpad('kappa_R9_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,12) = strpad('kappa_R10_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,13) = strpad('kappa_R11_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,14) = strpad('kappa_R12_a_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,15) = strpad('kappa_R1_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,16) = strpad('kappa_R2_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,17) = strpad('kappa_R3_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,18) = strpad('kappa_R4_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,19) = strpad('kappa_R5_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,20) = strpad('kappa_R6_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,21) = strpad('kappa_R7_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,22) = strpad('kappa_R8_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,23) = strpad('kappa_R9_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,24) = strpad('kappa_R10_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,25) = strpad('kappa_R11_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,26) = strpad('kappa_R12_b_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,27) = strpad('kappa_R1_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,28) = strpad('kappa_R2_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,29) = strpad('kappa_R3_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,30) = strpad('kappa_R4_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,31) = strpad('kappa_R5_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,32) = strpad('kappa_R6_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,33) = strpad('kappa_R7_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,34) = strpad('kappa_R8_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,35) = strpad('kappa_R9_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,36) = strpad('kappa_R10_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,37) = strpad('kappa_R11_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,38) = strpad('kappa_R12_c_IPR in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,39) = strpad('kappa_pCa_R1 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,40) = strpad('kappa_pCa_R2 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,41) = strpad('kappa_SERCA_R1_2 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,42) = strpad('kappa_SERCA_R2_4 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,43) = strpad('kappa_SERCA_R2_2a in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,44) = strpad('kappa_SERCA_R4_5 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,45) = strpad('kappa_SERCA_R5_6 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,46) = strpad('kappa_SERCA_R6_8 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,47) = strpad('kappa_SERCA_R8_9 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,48) = strpad('kappa_SERCA_R9_10 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,49) = strpad('kappa_SERCA_R10_1 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,50) = strpad('K_Ca_SR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,51) = strpad('K_Ca_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,52) = strpad('K_IP3 in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,53) = strpad('K_Sa_000_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,54) = strpad('K_Sa_001_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,55) = strpad('K_Sa_010_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,56) = strpad('K_Sa_011_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,57) = strpad('K_Sa_100_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,58) = strpad('K_Sa_101_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,59) = strpad('K_Sa_110_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,60) = strpad('K_Sa_111_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,61) = strpad('K_Sb_000_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,62) = strpad('K_Sb_001_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,63) = strpad('K_Sb_010_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,64) = strpad('K_Sb_011_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,65) = strpad('K_Sb_100_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,66) = strpad('K_Sb_101_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,67) = strpad('K_Sb_110_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,68) = strpad('K_Sb_111_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,69) = strpad('K_Sc_000_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,70) = strpad('K_Sc_001_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,71) = strpad('K_Sc_010_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,72) = strpad('K_Sc_011_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,73) = strpad('K_Sc_100_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,74) = strpad('K_Sc_101_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,75) = strpad('K_Sc_110_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,76) = strpad('K_Sc_111_IPR in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,77) = strpad('K_Ca_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,78) = strpad('K_pCa in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,79) = strpad('K_pCa_Ca in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,80) = strpad('K_P1_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,81) = strpad('K_P2_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,82) = strpad('K_P2a_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,83) = strpad('K_P4_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,84) = strpad('K_P5_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,85) = strpad('K_P6_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,86) = strpad('K_P8_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,87) = strpad('K_P9_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,88) = strpad('K_P10_SERCA in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,89) = strpad('K_H in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,90) = strpad('K_MgATP in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,91) = strpad('K_MgADP in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,92) = strpad('K_Pi in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,93) = strpad('K_PLBp in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,94) = strpad('zCa in component BG_parameters (dimensionless)');
LEGEND_VOI = strpad('time in component environment (second)');
LEGEND_CONSTANTS(:,95) = strpad('vol_myo in component environment (pL)');
LEGEND_CONSTANTS(:,96) = strpad('freq in component environment (dimensionless)');
LEGEND_STATES(:,1) = strpad('q_Ca_i in component environment (fmol)');
LEGEND_STATES(:,2) = strpad('q_Ca_SR in component environment (fmol)');
LEGEND_STATES(:,3) = strpad('q_IP3 in component environment (fmol)');
LEGEND_STATES(:,4) = strpad('q_Ca_o in component environment (fmol)');
LEGEND_STATES(:,5) = strpad('q_pCa in component environment (fmol)');
LEGEND_STATES(:,6) = strpad('q_pCa_Ca in component environment (fmol)');
LEGEND_STATES(:,7) = strpad('q_Sa_000_IPR in component environment (fmol)');
LEGEND_STATES(:,8) = strpad('q_Sa_001_IPR in component environment (fmol)');
LEGEND_STATES(:,9) = strpad('q_Sa_010_IPR in component environment (fmol)');
LEGEND_STATES(:,10) = strpad('q_Sa_011_IPR in component environment (fmol)');
LEGEND_STATES(:,11) = strpad('q_Sa_100_IPR in component environment (fmol)');
LEGEND_STATES(:,12) = strpad('q_Sa_101_IPR in component environment (fmol)');
LEGEND_STATES(:,13) = strpad('q_Sa_110_IPR in component environment (fmol)');
LEGEND_STATES(:,14) = strpad('q_Sa_111_IPR in component environment (fmol)');
LEGEND_STATES(:,15) = strpad('q_Sb_000_IPR in component environment (fmol)');
LEGEND_STATES(:,16) = strpad('q_Sb_001_IPR in component environment (fmol)');
LEGEND_STATES(:,17) = strpad('q_Sb_010_IPR in component environment (fmol)');
LEGEND_STATES(:,18) = strpad('q_Sb_011_IPR in component environment (fmol)');
LEGEND_STATES(:,19) = strpad('q_Sb_100_IPR in component environment (fmol)');
LEGEND_STATES(:,20) = strpad('q_Sb_101_IPR in component environment (fmol)');
LEGEND_STATES(:,21) = strpad('q_Sb_110_IPR in component environment (fmol)');
LEGEND_STATES(:,22) = strpad('q_Sb_111_IPR in component environment (fmol)');
LEGEND_STATES(:,23) = strpad('q_Sc_000_IPR in component environment (fmol)');
LEGEND_STATES(:,24) = strpad('q_Sc_001_IPR in component environment (fmol)');
LEGEND_STATES(:,25) = strpad('q_Sc_010_IPR in component environment (fmol)');
LEGEND_STATES(:,26) = strpad('q_Sc_011_IPR in component environment (fmol)');
LEGEND_STATES(:,27) = strpad('q_Sc_100_IPR in component environment (fmol)');
LEGEND_STATES(:,28) = strpad('q_Sc_101_IPR in component environment (fmol)');
LEGEND_STATES(:,29) = strpad('q_Sc_110_IPR in component environment (fmol)');
LEGEND_STATES(:,30) = strpad('q_Sc_111_IPR in component environment (fmol)');
LEGEND_STATES(:,31) = strpad('q_H in component environment (fmol)');
LEGEND_STATES(:,32) = strpad('q_Pi in component environment (fmol)');
LEGEND_STATES(:,33) = strpad('q_MgADP in component environment (fmol)');
LEGEND_STATES(:,34) = strpad('q_MgATP in component environment (fmol)');
LEGEND_STATES(:,35) = strpad('q_P1_SERCA in component environment (fmol)');
LEGEND_STATES(:,36) = strpad('q_P2_SERCA in component environment (fmol)');
LEGEND_STATES(:,37) = strpad('q_P2a_SERCA in component environment (fmol)');
LEGEND_STATES(:,38) = strpad('q_P4_SERCA in component environment (fmol)');
LEGEND_STATES(:,39) = strpad('q_P5_SERCA in component environment (fmol)');
LEGEND_STATES(:,40) = strpad('q_P6_SERCA in component environment (fmol)');
LEGEND_STATES(:,41) = strpad('q_P8_SERCA in component environment (fmol)');
LEGEND_STATES(:,42) = strpad('q_P9_SERCA in component environment (fmol)');
LEGEND_STATES(:,43) = strpad('q_P10_SERCA in component environment (fmol)');
LEGEND_CONSTANTS(:,97) = strpad('q_PLBp in component environment (fmol)');
LEGEND_CONSTANTS(:,98) = strpad('q_PLBp_baseline in component environment (fmol)');
LEGEND_ALGEBRAIC(:,10) = strpad('v_leak in component Ca_leak (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,39) = strpad('v_R_IPR_main in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,40) = strpad('v_R1_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,41) = strpad('v_R2_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,42) = strpad('v_R3_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,43) = strpad('v_R4_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,44) = strpad('v_R5_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,45) = strpad('v_R6_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,46) = strpad('v_R7_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,47) = strpad('v_R8_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,48) = strpad('v_R9_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,49) = strpad('v_R10_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,50) = strpad('v_R11_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,51) = strpad('v_R12_a_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,52) = strpad('v_R1_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,53) = strpad('v_R2_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,54) = strpad('v_R3_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,55) = strpad('v_R4_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,56) = strpad('v_R5_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,57) = strpad('v_R6_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,58) = strpad('v_R7_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,59) = strpad('v_R8_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,60) = strpad('v_R9_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,61) = strpad('v_R10_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,62) = strpad('v_R11_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,63) = strpad('v_R12_b_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,64) = strpad('v_R1_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,65) = strpad('v_R2_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,66) = strpad('v_R3_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,67) = strpad('v_R4_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,68) = strpad('v_R5_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,69) = strpad('v_R6_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,70) = strpad('v_R7_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,71) = strpad('v_R8_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,72) = strpad('v_R9_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,74) = strpad('v_R10_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,76) = strpad('v_R11_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,78) = strpad('v_R12_c_IPR in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,80) = strpad('v_pCa_R1 in component pCa (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,81) = strpad('v_pCa_R2 in component pCa (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,127) = strpad('v_Ca_i_SERCA in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,133) = strpad('v_Ca_SR_SERCA in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,138) = strpad('v_H_SERCA in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,124) = strpad('v_MgADP_SERCA in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,121) = strpad('v_MgATP_SERCA in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,119) = strpad('v_Pi_SERCA in component SERCA (fmol_per_sec)');
LEGEND_CONSTANTS(:,99) = strpad('Ca_influx in component environment (fmol_per_sec)');
LEGEND_CONSTANTS(:,100) = strpad('Ca_influx_IP3 in component environment (per_sec)');
LEGEND_CONSTANTS(:,101) = strpad('R in component constants (J_per_K_per_mol)');
LEGEND_CONSTANTS(:,102) = strpad('T in component constants (kelvin)');
LEGEND_CONSTANTS(:,103) = strpad('F in component constants (C_per_mol)');
LEGEND_ALGEBRAIC(:,8) = strpad('mu_Ca_SR in component Ca_leak (J_per_mol)');
LEGEND_ALGEBRAIC(:,9) = strpad('mu_Ca_i in component Ca_leak (J_per_mol)');
LEGEND_ALGEBRAIC(:,11) = strpad('mu_Ca_i in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,12) = strpad('mu_Ca_SR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,14) = strpad('mu_IP3 in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,15) = strpad('mu_Sa_000_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,16) = strpad('mu_Sa_001_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,17) = strpad('mu_Sa_010_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,18) = strpad('mu_Sa_011_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,19) = strpad('mu_Sa_100_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,20) = strpad('mu_Sa_101_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,21) = strpad('mu_Sa_110_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,22) = strpad('mu_Sa_111_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,23) = strpad('mu_Sb_000_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,24) = strpad('mu_Sb_001_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,25) = strpad('mu_Sb_010_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,26) = strpad('mu_Sb_011_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,27) = strpad('mu_Sb_100_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,28) = strpad('mu_Sb_101_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,29) = strpad('mu_Sb_110_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,30) = strpad('mu_Sb_111_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,31) = strpad('mu_Sc_000_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,32) = strpad('mu_Sc_001_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,33) = strpad('mu_Sc_010_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,34) = strpad('mu_Sc_011_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,35) = strpad('mu_Sc_100_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,36) = strpad('mu_Sc_101_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,37) = strpad('mu_Sc_110_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,38) = strpad('mu_Sc_111_IPR in component IPR (J_per_mol)');
LEGEND_ALGEBRAIC(:,13) = strpad('v_R_IPR_main_nogate in component IPR (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,73) = strpad('mu_Ca_i in component pCa (J_per_mol)');
LEGEND_ALGEBRAIC(:,75) = strpad('mu_Ca_o in component pCa (J_per_mol)');
LEGEND_ALGEBRAIC(:,77) = strpad('mu_pCa in component pCa (J_per_mol)');
LEGEND_ALGEBRAIC(:,79) = strpad('mu_pCa_Ca in component pCa (J_per_mol)');
LEGEND_ALGEBRAIC(:,83) = strpad('I_mem_pCa in component pCa (fA)');
LEGEND_CONSTANTS(:,104) = strpad('n_Ca_i in component SERCA (dimensionless)');
LEGEND_CONSTANTS(:,105) = strpad('n_Ca_SR in component SERCA (dimensionless)');
LEGEND_CONSTANTS(:,106) = strpad('n_H in component SERCA (dimensionless)');
LEGEND_ALGEBRAIC(:,1) = strpad('q_SERCA_Ca_complexes in component SERCA (fmol)');
LEGEND_ALGEBRAIC(:,2) = strpad('c_Ca_i in component SERCA (mM)');
LEGEND_ALGEBRAIC(:,3) = strpad('c_Ca_SR in component SERCA (mM)');
LEGEND_ALGEBRAIC(:,4) = strpad('c_H in component SERCA (mM)');
LEGEND_ALGEBRAIC(:,5) = strpad('c_MgADP in component SERCA (mM)');
LEGEND_ALGEBRAIC(:,6) = strpad('c_MgATP in component SERCA (mM)');
LEGEND_ALGEBRAIC(:,7) = strpad('c_Pi in component SERCA (mM)');
LEGEND_CONSTANTS(:,107) = strpad('vol_i in component SERCA (pL)');
LEGEND_CONSTANTS(:,108) = strpad('vol_sr in component SERCA (pL)');
LEGEND_CONSTANTS(:,110) = strpad('vol_isr in component SERCA (pL)');
LEGEND_ALGEBRAIC(:,82) = strpad('mu_Ca_i in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,84) = strpad('mu_Ca_SR in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,85) = strpad('mu_H in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,86) = strpad('mu_MgADP in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,87) = strpad('mu_MgATP in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,89) = strpad('mu_P1 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,122) = strpad('v_P1 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,88) = strpad('mu_Pi in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,90) = strpad('mu_P2 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,129) = strpad('v_P2 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,91) = strpad('mu_P2a in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,126) = strpad('v_P2a in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,92) = strpad('mu_P4 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,131) = strpad('v_P4 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,93) = strpad('mu_P5 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,132) = strpad('v_P5 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,95) = strpad('mu_P6 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,135) = strpad('v_P6 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,97) = strpad('mu_P8 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,137) = strpad('v_P8 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,98) = strpad('mu_P9 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,139) = strpad('v_P9 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,94) = strpad('mu_P10 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,140) = strpad('v_P10 in component SERCA (fmol_per_sec)');
LEGEND_CONSTANTS(:,109) = strpad('mu_PLBp_baseline in component SERCA (J_per_mol)');
LEGEND_CONSTANTS(:,111) = strpad('mu_PLBp in component SERCA (J_per_mol)');
LEGEND_CONSTANTS(:,112) = strpad('mu_PLBp_eff in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,101) = strpad('Af_R1_2 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,102) = strpad('Ar_R1_2 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,118) = strpad('v_SERCA_R1_2 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,103) = strpad('Af_R5_6 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,104) = strpad('Ar_R5_6 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,120) = strpad('v_SERCA_R5_6 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,105) = strpad('Af_R2_2a in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,106) = strpad('Ar_R2_2a in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,123) = strpad('v_SERCA_R2_2a in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,107) = strpad('Af_R2_4 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,108) = strpad('Ar_R2_4 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,125) = strpad('v_SERCA_R2_4 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,109) = strpad('Af_R4_5 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,110) = strpad('Ar_R4_5 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,128) = strpad('v_SERCA_R4_5 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,111) = strpad('Af_R6_8 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,112) = strpad('Ar_R6_8 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,130) = strpad('v_SERCA_R6_8 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,113) = strpad('Af_R8_9 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,114) = strpad('Ar_R8_9 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,134) = strpad('v_SERCA_R8_9 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,115) = strpad('Af_R9_10 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,116) = strpad('Ar_R9_10 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,136) = strpad('v_SERCA_R9_10 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,99) = strpad('Af_R10_1 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,100) = strpad('Ar_R10_1 in component SERCA (J_per_mol)');
LEGEND_ALGEBRAIC(:,117) = strpad('v_SERCA_R10_1 in component SERCA (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,96) = strpad('v_SERCA_R10_1_noPLBp in component SERCA (fmol_per_sec)');
LEGEND_RATES(:,1) = strpad('d/dt q_Ca_i in component environment (fmol)');
LEGEND_RATES(:,4) = strpad('d/dt q_Ca_o in component environment (fmol)');
LEGEND_RATES(:,5) = strpad('d/dt q_pCa in component environment (fmol)');
LEGEND_RATES(:,6) = strpad('d/dt q_pCa_Ca in component environment (fmol)');
LEGEND_RATES(:,2) = strpad('d/dt q_Ca_SR in component environment (fmol)');
LEGEND_RATES(:,3) = strpad('d/dt q_IP3 in component environment (fmol)');
LEGEND_RATES(:,31) = strpad('d/dt q_H in component environment (fmol)');
LEGEND_RATES(:,33) = strpad('d/dt q_MgADP in component environment (fmol)');
LEGEND_RATES(:,34) = strpad('d/dt q_MgATP in component environment (fmol)');
LEGEND_RATES(:,32) = strpad('d/dt q_Pi in component environment (fmol)');
LEGEND_RATES(:,7) = strpad('d/dt q_Sa_000_IPR in component environment (fmol)');
LEGEND_RATES(:,8) = strpad('d/dt q_Sa_001_IPR in component environment (fmol)');
LEGEND_RATES(:,9) = strpad('d/dt q_Sa_010_IPR in component environment (fmol)');
LEGEND_RATES(:,10) = strpad('d/dt q_Sa_011_IPR in component environment (fmol)');
LEGEND_RATES(:,11) = strpad('d/dt q_Sa_100_IPR in component environment (fmol)');
LEGEND_RATES(:,12) = strpad('d/dt q_Sa_101_IPR in component environment (fmol)');
LEGEND_RATES(:,13) = strpad('d/dt q_Sa_110_IPR in component environment (fmol)');
LEGEND_RATES(:,14) = strpad('d/dt q_Sa_111_IPR in component environment (fmol)');
LEGEND_RATES(:,15) = strpad('d/dt q_Sb_000_IPR in component environment (fmol)');
LEGEND_RATES(:,16) = strpad('d/dt q_Sb_001_IPR in component environment (fmol)');
LEGEND_RATES(:,17) = strpad('d/dt q_Sb_010_IPR in component environment (fmol)');
LEGEND_RATES(:,18) = strpad('d/dt q_Sb_011_IPR in component environment (fmol)');
LEGEND_RATES(:,19) = strpad('d/dt q_Sb_100_IPR in component environment (fmol)');
LEGEND_RATES(:,20) = strpad('d/dt q_Sb_101_IPR in component environment (fmol)');
LEGEND_RATES(:,21) = strpad('d/dt q_Sb_110_IPR in component environment (fmol)');
LEGEND_RATES(:,22) = strpad('d/dt q_Sb_111_IPR in component environment (fmol)');
LEGEND_RATES(:,23) = strpad('d/dt q_Sc_000_IPR in component environment (fmol)');
LEGEND_RATES(:,24) = strpad('d/dt q_Sc_001_IPR in component environment (fmol)');
LEGEND_RATES(:,25) = strpad('d/dt q_Sc_010_IPR in component environment (fmol)');
LEGEND_RATES(:,26) = strpad('d/dt q_Sc_011_IPR in component environment (fmol)');
LEGEND_RATES(:,27) = strpad('d/dt q_Sc_100_IPR in component environment (fmol)');
LEGEND_RATES(:,28) = strpad('d/dt q_Sc_101_IPR in component environment (fmol)');
LEGEND_RATES(:,29) = strpad('d/dt q_Sc_110_IPR in component environment (fmol)');
LEGEND_RATES(:,30) = strpad('d/dt q_Sc_111_IPR in component environment (fmol)');
LEGEND_RATES(:,35) = strpad('d/dt q_P1_SERCA in component environment (fmol)');
LEGEND_RATES(:,36) = strpad('d/dt q_P2_SERCA in component environment (fmol)');
LEGEND_RATES(:,37) = strpad('d/dt q_P2a_SERCA in component environment (fmol)');
LEGEND_RATES(:,38) = strpad('d/dt q_P4_SERCA in component environment (fmol)');
LEGEND_RATES(:,39) = strpad('d/dt q_P5_SERCA in component environment (fmol)');
LEGEND_RATES(:,43) = strpad('d/dt q_P10_SERCA in component environment (fmol)');
LEGEND_RATES(:,40) = strpad('d/dt q_P6_SERCA in component environment (fmol)');
LEGEND_RATES(:,41) = strpad('d/dt q_P8_SERCA in component environment (fmol)');
LEGEND_RATES(:,42) = strpad('d/dt q_P9_SERCA in component environment (fmol)');
LEGEND_STATES = LEGEND_STATES';
LEGEND_ALGEBRAIC = LEGEND_ALGEBRAIC';
LEGEND_RATES = LEGEND_RATES';
LEGEND_CONSTANTS = LEGEND_CONSTANTS';
end
function [STATES, CONSTANTS] = initConsts()
VOI = 0; CONSTANTS = []; STATES = []; ALGEBRAIC = [];
CONSTANTS(:,1) = 3.07502e-09;
CONSTANTS(:,2) = 2.9078e+08;
CONSTANTS(:,3) = 0.0125066;
CONSTANTS(:,4) = 16.6342;
CONSTANTS(:,5) = 0.291916;
CONSTANTS(:,6) = 1.25066;
CONSTANTS(:,7) = 5.31398e-05;
CONSTANTS(:,8) = 0.00973583;
CONSTANTS(:,9) = 1.18239;
CONSTANTS(:,10) = 4829.13;
CONSTANTS(:,11) = 0.0955807;
CONSTANTS(:,12) = 0.00718894;
CONSTANTS(:,13) = 2.23094;
CONSTANTS(:,14) = 152486;
CONSTANTS(:,15) = 0.0125066;
CONSTANTS(:,16) = 16.6342;
CONSTANTS(:,17) = 0.291916;
CONSTANTS(:,18) = 1.25066;
CONSTANTS(:,19) = 5.31398e-05;
CONSTANTS(:,20) = 0.00973583;
CONSTANTS(:,21) = 1.18239;
CONSTANTS(:,22) = 4829.13;
CONSTANTS(:,23) = 0.0955807;
CONSTANTS(:,24) = 0.00718894;
CONSTANTS(:,25) = 2.23094;
CONSTANTS(:,26) = 152486;
CONSTANTS(:,27) = 0.0125066;
CONSTANTS(:,28) = 16.6342;
CONSTANTS(:,29) = 0.291916;
CONSTANTS(:,30) = 1.25066;
CONSTANTS(:,31) = 5.31398e-05;
CONSTANTS(:,32) = 0.00973583;
CONSTANTS(:,33) = 1.18239;
CONSTANTS(:,34) = 4829.13;
CONSTANTS(:,35) = 0.0955807;
CONSTANTS(:,36) = 0.00718894;
CONSTANTS(:,37) = 2.23094;
CONSTANTS(:,38) = 152486;
CONSTANTS(:,39) = 1654.75;
CONSTANTS(:,40) = 0.00021208;
CONSTANTS(:,41) = 2.90729e-06;
CONSTANTS(:,42) = 0.166593;
CONSTANTS(:,43) = 40567.4;
CONSTANTS(:,44) = 0.166593;
CONSTANTS(:,45) = 0.41262;
CONSTANTS(:,46) = 3.47304;
CONSTANTS(:,47) = 12551.8;
CONSTANTS(:,48) = 12551.8;
CONSTANTS(:,49) = 6.07543e-05;
CONSTANTS(:,50) = 391.219;
CONSTANTS(:,51) = 20.1363;
CONSTANTS(:,52) = 70087.3;
CONSTANTS(:,53) = 30.734;
CONSTANTS(:,54) = 2.31077;
CONSTANTS(:,55) = 1.31674;
CONSTANTS(:,56) = 0.0990011;
CONSTANTS(:,57) = 7233.34;
CONSTANTS(:,58) = 3948.08;
CONSTANTS(:,59) = 0.000341014;
CONSTANTS(:,60) = 169.148;
CONSTANTS(:,61) = 30.734;
CONSTANTS(:,62) = 2.31077;
CONSTANTS(:,63) = 1.31674;
CONSTANTS(:,64) = 0.0990011;
CONSTANTS(:,65) = 7233.34;
CONSTANTS(:,66) = 3948.08;
CONSTANTS(:,67) = 0.000341014;
CONSTANTS(:,68) = 169.148;
CONSTANTS(:,69) = 30.734;
CONSTANTS(:,70) = 2.31077;
CONSTANTS(:,71) = 1.31674;
CONSTANTS(:,72) = 0.0990011;
CONSTANTS(:,73) = 7233.34;
CONSTANTS(:,74) = 3948.08;
CONSTANTS(:,75) = 0.000341014;
CONSTANTS(:,76) = 169.148;
CONSTANTS(:,77) = 5.02046e-05;
CONSTANTS(:,78) = 0.0449472;
CONSTANTS(:,79) = 0.0116935;
CONSTANTS(:,80) = 10.9783;
CONSTANTS(:,81) = 0.170651;
CONSTANTS(:,82) = 0.157113;
CONSTANTS(:,83) = 38259;
CONSTANTS(:,84) = 0.00151486;
CONSTANTS(:,85) = 9208.24;
CONSTANTS(:,86) = 0.00677857;
CONSTANTS(:,87) = 0.50779;
CONSTANTS(:,88) = 0.0830361;
CONSTANTS(:,89) = 3108.77;
CONSTANTS(:,90) = 7.72815;
CONSTANTS(:,91) = 1.68438e-07;
CONSTANTS(:,92) = 0.00212752;
CONSTANTS(:,93) = 78.0122;
CONSTANTS(:,94) = 2;
CONSTANTS(:,95) = 34.4;
CONSTANTS(:,96) = 500;
STATES(:,1) = 0.007540192;
STATES(:,2) = 0.763997897;
STATES(:,3) = 5e-3;
STATES(:,4) = 9.3276;
STATES(:,5) = 0.0032;
STATES(:,6) = 1e-9;
STATES(:,7) = 5e-6;
STATES(:,8) = 5e-6;
STATES(:,9) = 5e-6;
STATES(:,10) = 5e-6;
STATES(:,11) = 5e-6;
STATES(:,12) = 5e-6;
STATES(:,13) = 5e-6;
STATES(:,14) = 5e-6;
STATES(:,15) = 5e-6;
STATES(:,16) = 5e-6;
STATES(:,17) = 5e-6;
STATES(:,18) = 5e-6;
STATES(:,19) = 5e-6;
STATES(:,20) = 5e-6;
STATES(:,21) = 5e-6;
STATES(:,22) = 5e-6;
STATES(:,23) = 5e-6;
STATES(:,24) = 5e-6;
STATES(:,25) = 5e-6;
STATES(:,26) = 5e-6;
STATES(:,27) = 5e-6;
STATES(:,28) = 5e-6;
STATES(:,29) = 5e-6;
STATES(:,30) = 5e-6;
STATES(:,31) = 0.004028;
STATES(:,32) = 570;
STATES(:,33) = 1.3794;
STATES(:,34) = 3.8;
STATES(:,35) = 2.54733e-08;
STATES(:,36) = 2.54733e-08;
STATES(:,37) = 2.54733e-08;
STATES(:,38) = 2.54733e-08;
STATES(:,39) = 2.54733e-08;
STATES(:,40) = 2.54733e-08;
STATES(:,41) = 2.54733e-08;
STATES(:,42) = 2.54733e-08;
STATES(:,43) = 2.54733e-08;
CONSTANTS(:,97) = 2.54733e-08;
CONSTANTS(:,98) = 2.54733e-08;
CONSTANTS(:,99) = 1e-5;
CONSTANTS(:,100) = 1e-5;
CONSTANTS(:,101) = 8.31;
CONSTANTS(:,102) = 310;
CONSTANTS(:,103) = 96485;
CONSTANTS(:,104) = 2;
CONSTANTS(:,105) = 2;
CONSTANTS(:,106) = 2;
CONSTANTS(:,107) = 34.0;
CONSTANTS(:,108) = CONSTANTS(:,107).*0.0350000;
CONSTANTS(:,109) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,93).*CONSTANTS(:,97));
CONSTANTS(:,110) = CONSTANTS(:,107)+CONSTANTS(:,108);
CONSTANTS(:,111) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,93).*CONSTANTS(:,98));
CONSTANTS(:,112) = CONSTANTS(:,109) - CONSTANTS(:,111);
if (isempty(STATES)), warning('Initial values for states not set');, end
end
function [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS)
disp(VOI)
global algebraicVariableCount;
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
ALGEBRAIC = zeros(1, algebraicVariableCount);
utilOnes = 1;
else
statesRowCount = statesSize(1);
ALGEBRAIC = zeros(statesRowCount, algebraicVariableCount);
RATES = zeros(statesRowCount, statesColumnCount);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,11) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,15) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,53).*STATES(:,7));
ALGEBRAIC(:,16) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,54).*STATES(:,8));
ALGEBRAIC(:,40) = CONSTANTS(:,3).*(exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,16)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,18) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,56).*STATES(:,10));
ALGEBRAIC(:,41) = CONSTANTS(:,4).*(exp((ALGEBRAIC(:,16)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,18)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,14) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,52).*STATES(:,3));
ALGEBRAIC(:,20) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,58).*STATES(:,12));
ALGEBRAIC(:,48) = CONSTANTS(:,11).*(exp((ALGEBRAIC(:,16)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,20)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,8) = (ALGEBRAIC(:,40) - ALGEBRAIC(:,41)) - ALGEBRAIC(:,48);
ALGEBRAIC(:,19) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,57).*STATES(:,11));
ALGEBRAIC(:,44) = CONSTANTS(:,7).*(exp((ALGEBRAIC(:,19)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,20)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,22) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,60).*STATES(:,14));
ALGEBRAIC(:,45) = CONSTANTS(:,8).*(exp((ALGEBRAIC(:,20)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,12) = (ALGEBRAIC(:,44) - ALGEBRAIC(:,45))+ALGEBRAIC(:,48);
ALGEBRAIC(:,17) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,55).*STATES(:,9));
ALGEBRAIC(:,43) = CONSTANTS(:,6).*(exp(ALGEBRAIC(:,17)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,49) = CONSTANTS(:,12).*(exp(ALGEBRAIC(:,19)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,7) = - ALGEBRAIC(:,40)+ALGEBRAIC(:,43)+ALGEBRAIC(:,49);
ALGEBRAIC(:,21) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,59).*STATES(:,13));
ALGEBRAIC(:,47) = CONSTANTS(:,10).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,19)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,11) = ( - ALGEBRAIC(:,44)+ALGEBRAIC(:,47)) - ALGEBRAIC(:,49);
ALGEBRAIC(:,42) = CONSTANTS(:,5).*(exp(ALGEBRAIC(:,18)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,17)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,50) = CONSTANTS(:,13).*(exp((ALGEBRAIC(:,18)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,10) = (ALGEBRAIC(:,41) - ALGEBRAIC(:,42)) - ALGEBRAIC(:,50);
ALGEBRAIC(:,46) = CONSTANTS(:,9).*(exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,21)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,14) = (ALGEBRAIC(:,45) - ALGEBRAIC(:,46))+ALGEBRAIC(:,50);
ALGEBRAIC(:,51) = CONSTANTS(:,14).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,17)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,9) = (ALGEBRAIC(:,42) - ALGEBRAIC(:,43))+ALGEBRAIC(:,51);
RATES(:,13) = (ALGEBRAIC(:,46) - ALGEBRAIC(:,47)) - ALGEBRAIC(:,51);
ALGEBRAIC(:,23) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,61).*STATES(:,15));
ALGEBRAIC(:,24) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,62).*STATES(:,16));
ALGEBRAIC(:,52) = CONSTANTS(:,15).*(exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,24)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,26) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,64).*STATES(:,18));
ALGEBRAIC(:,53) = CONSTANTS(:,16).*(exp((ALGEBRAIC(:,24)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,26)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,28) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,66).*STATES(:,20));
ALGEBRAIC(:,60) = CONSTANTS(:,23).*(exp((ALGEBRAIC(:,24)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,28)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,16) = (ALGEBRAIC(:,52) - ALGEBRAIC(:,53)) - ALGEBRAIC(:,60);
ALGEBRAIC(:,27) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,65).*STATES(:,19));
ALGEBRAIC(:,56) = CONSTANTS(:,19).*(exp((ALGEBRAIC(:,27)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,28)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,30) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,68).*STATES(:,22));
ALGEBRAIC(:,57) = CONSTANTS(:,20).*(exp((ALGEBRAIC(:,28)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,20) = (ALGEBRAIC(:,56) - ALGEBRAIC(:,57))+ALGEBRAIC(:,60);
ALGEBRAIC(:,25) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,63).*STATES(:,17));
ALGEBRAIC(:,55) = CONSTANTS(:,18).*(exp(ALGEBRAIC(:,25)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,61) = CONSTANTS(:,24).*(exp(ALGEBRAIC(:,27)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,15) = - ALGEBRAIC(:,52)+ALGEBRAIC(:,55)+ALGEBRAIC(:,61);
ALGEBRAIC(:,29) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,67).*STATES(:,21));
ALGEBRAIC(:,59) = CONSTANTS(:,22).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,27)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,19) = ( - ALGEBRAIC(:,56)+ALGEBRAIC(:,59)) - ALGEBRAIC(:,61);
ALGEBRAIC(:,54) = CONSTANTS(:,17).*(exp(ALGEBRAIC(:,26)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,25)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,62) = CONSTANTS(:,25).*(exp((ALGEBRAIC(:,26)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,18) = (ALGEBRAIC(:,53) - ALGEBRAIC(:,54)) - ALGEBRAIC(:,62);
ALGEBRAIC(:,58) = CONSTANTS(:,21).*(exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,29)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,22) = (ALGEBRAIC(:,57) - ALGEBRAIC(:,58))+ALGEBRAIC(:,62);
ALGEBRAIC(:,63) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,25)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,17) = (ALGEBRAIC(:,54) - ALGEBRAIC(:,55))+ALGEBRAIC(:,63);
RATES(:,21) = (ALGEBRAIC(:,58) - ALGEBRAIC(:,59)) - ALGEBRAIC(:,63);
ALGEBRAIC(:,31) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,69).*STATES(:,23));
ALGEBRAIC(:,32) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,70).*STATES(:,24));
ALGEBRAIC(:,64) = CONSTANTS(:,27).*(exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,32)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,34) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,72).*STATES(:,26));
ALGEBRAIC(:,65) = CONSTANTS(:,28).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,34)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,36) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,74).*STATES(:,28));
ALGEBRAIC(:,72) = CONSTANTS(:,35).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,24) = (ALGEBRAIC(:,64) - ALGEBRAIC(:,65)) - ALGEBRAIC(:,72);
ALGEBRAIC(:,35) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,73).*STATES(:,27));
ALGEBRAIC(:,68) = CONSTANTS(:,31).*(exp((ALGEBRAIC(:,35)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,38) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,76).*STATES(:,30));
ALGEBRAIC(:,69) = CONSTANTS(:,32).*(exp((ALGEBRAIC(:,36)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,28) = (ALGEBRAIC(:,68) - ALGEBRAIC(:,69))+ALGEBRAIC(:,72);
ALGEBRAIC(:,33) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,71).*STATES(:,25));
ALGEBRAIC(:,67) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,33)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,74) = CONSTANTS(:,36).*(exp(ALGEBRAIC(:,35)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,23) = - ALGEBRAIC(:,64)+ALGEBRAIC(:,67)+ALGEBRAIC(:,74);
ALGEBRAIC(:,37) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,75).*STATES(:,29));
ALGEBRAIC(:,71) = CONSTANTS(:,34).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,35)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,27) = ( - ALGEBRAIC(:,68)+ALGEBRAIC(:,71)) - ALGEBRAIC(:,74);
ALGEBRAIC(:,66) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,33)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,76) = CONSTANTS(:,37).*(exp((ALGEBRAIC(:,34)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,26) = (ALGEBRAIC(:,65) - ALGEBRAIC(:,66)) - ALGEBRAIC(:,76);
ALGEBRAIC(:,70) = CONSTANTS(:,33).*(exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,37)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,30) = (ALGEBRAIC(:,69) - ALGEBRAIC(:,70))+ALGEBRAIC(:,76);
ALGEBRAIC(:,78) = CONSTANTS(:,38).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,33)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,3) = (((((((((( - ALGEBRAIC(:,48)+ALGEBRAIC(:,49)) - ALGEBRAIC(:,50))+ALGEBRAIC(:,51)) - ALGEBRAIC(:,60))+ALGEBRAIC(:,61)) - ALGEBRAIC(:,62))+ALGEBRAIC(:,63)) - ALGEBRAIC(:,72))+ALGEBRAIC(:,74)) - ALGEBRAIC(:,76))+ALGEBRAIC(:,78);
RATES(:,25) = (ALGEBRAIC(:,66) - ALGEBRAIC(:,67))+ALGEBRAIC(:,78);
RATES(:,29) = (ALGEBRAIC(:,70) - ALGEBRAIC(:,71)) - ALGEBRAIC(:,78);
ALGEBRAIC(:,75) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,77).*STATES(:,4));
ALGEBRAIC(:,77) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,78).*STATES(:,5));
ALGEBRAIC(:,79) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,79).*STATES(:,6));
ALGEBRAIC(:,81) = CONSTANTS(:,40).*(exp(ALGEBRAIC(:,79)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,75)+ALGEBRAIC(:,77))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,4) = ALGEBRAIC(:,81);
ALGEBRAIC(:,73) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,80) = CONSTANTS(:,39).*(exp((ALGEBRAIC(:,73)+ALGEBRAIC(:,77))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,79)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
RATES(:,5) = - ALGEBRAIC(:,80)+ALGEBRAIC(:,81);
RATES(:,6) = ALGEBRAIC(:,80) - ALGEBRAIC(:,81);
ALGEBRAIC(:,94) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,88).*STATES(:,43));
ALGEBRAIC(:,99) = ALGEBRAIC(:,94)+CONSTANTS(:,112);
ALGEBRAIC(:,89) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,80).*STATES(:,35));
ALGEBRAIC(:,88) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,92).*STATES(:,32));
ALGEBRAIC(:,100) = ALGEBRAIC(:,89)+ALGEBRAIC(:,88)+CONSTANTS(:,112);
ALGEBRAIC(:,117) = CONSTANTS(:,49).*(exp(ALGEBRAIC(:,99)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,100)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,119) = ALGEBRAIC(:,117);
RATES(:,32) = ALGEBRAIC(:,119);
ALGEBRAIC(:,87) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,90).*STATES(:,34));
ALGEBRAIC(:,101) = ALGEBRAIC(:,89)+ALGEBRAIC(:,87)+CONSTANTS(:,112);
ALGEBRAIC(:,90) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,81).*STATES(:,36));
ALGEBRAIC(:,102) = ALGEBRAIC(:,90)+CONSTANTS(:,112);
ALGEBRAIC(:,118) = CONSTANTS(:,41).*(exp(ALGEBRAIC(:,101)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,102)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,121) = - ALGEBRAIC(:,118);
RATES(:,34) = ALGEBRAIC(:,121);
ALGEBRAIC(:,122) = ALGEBRAIC(:,117) - ALGEBRAIC(:,118);
RATES(:,35) = ALGEBRAIC(:,122);
ALGEBRAIC(:,93) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,84).*STATES(:,39));
ALGEBRAIC(:,103) = ALGEBRAIC(:,93)+CONSTANTS(:,112);
ALGEBRAIC(:,86) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,91).*STATES(:,33));
ALGEBRAIC(:,95) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,85).*STATES(:,40));
ALGEBRAIC(:,104) = ALGEBRAIC(:,86)+ALGEBRAIC(:,95)+CONSTANTS(:,112);
ALGEBRAIC(:,120) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,103)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,104)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,124) = ALGEBRAIC(:,120);
RATES(:,33) = ALGEBRAIC(:,124);
ALGEBRAIC(:,85) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,89).*STATES(:,31));
ALGEBRAIC(:,105) = ALGEBRAIC(:,90)+ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,91) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,82).*STATES(:,37));
ALGEBRAIC(:,106) = ALGEBRAIC(:,91)+CONSTANTS(:,112);
ALGEBRAIC(:,123) = CONSTANTS(:,43).*(exp(ALGEBRAIC(:,105)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,106)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,126) = ALGEBRAIC(:,123);
RATES(:,37) = ALGEBRAIC(:,126);
ALGEBRAIC(:,8) = ( CONSTANTS(:,101).*CONSTANTS(:,102)).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,9) = ( CONSTANTS(:,101).*CONSTANTS(:,102)).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,10) = CONSTANTS(:,1).*(exp(ALGEBRAIC(:,8)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,12) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,39) = CONSTANTS(:,2).*(exp((ALGEBRAIC(:,12)+ALGEBRAIC(:,21)+ALGEBRAIC(:,29)+ALGEBRAIC(:,37))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,11)+ALGEBRAIC(:,21)+ALGEBRAIC(:,29)+ALGEBRAIC(:,37))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,82) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,107) = ALGEBRAIC(:,90)+ CONSTANTS(:,104).*ALGEBRAIC(:,82)+CONSTANTS(:,112);
ALGEBRAIC(:,92) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,83).*STATES(:,38));
ALGEBRAIC(:,108) = ALGEBRAIC(:,92)+CONSTANTS(:,112);
ALGEBRAIC(:,125) = CONSTANTS(:,42).*(exp(ALGEBRAIC(:,107)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,108)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,127) = - CONSTANTS(:,104).*ALGEBRAIC(:,125);
RATES(:,1) = ((((((((((((((((((((ALGEBRAIC(:,10)+ALGEBRAIC(:,127)) - ALGEBRAIC(:,80))+ALGEBRAIC(:,39)+ STATES(:,3).*CONSTANTS(:,100)) - ALGEBRAIC(:,40)) - ALGEBRAIC(:,41))+ALGEBRAIC(:,42)+ALGEBRAIC(:,43)) - ALGEBRAIC(:,44)) - ALGEBRAIC(:,45))+ALGEBRAIC(:,46)+ALGEBRAIC(:,47)) - ALGEBRAIC(:,52)) - ALGEBRAIC(:,53))+ALGEBRAIC(:,54)+ALGEBRAIC(:,55)) - ALGEBRAIC(:,56)) - ALGEBRAIC(:,57))+ALGEBRAIC(:,58)+ALGEBRAIC(:,59)) - ALGEBRAIC(:,64)) - ALGEBRAIC(:,65))+ALGEBRAIC(:,66)+ALGEBRAIC(:,67)) - ALGEBRAIC(:,68)) - ALGEBRAIC(:,69))+ALGEBRAIC(:,70)+ALGEBRAIC(:,71);
ALGEBRAIC(:,129) = ALGEBRAIC(:,118) - ALGEBRAIC(:,125);
RATES(:,36) = ALGEBRAIC(:,129);
ALGEBRAIC(:,109) = ALGEBRAIC(:,92)+CONSTANTS(:,112);
ALGEBRAIC(:,110) = ALGEBRAIC(:,93)+ CONSTANTS(:,106).*ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,128) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,109)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,110)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,131) = ALGEBRAIC(:,125) - ALGEBRAIC(:,128);
RATES(:,38) = ALGEBRAIC(:,131);
ALGEBRAIC(:,132) = ALGEBRAIC(:,128) - ALGEBRAIC(:,120);
RATES(:,39) = ALGEBRAIC(:,132);
ALGEBRAIC(:,111) = ALGEBRAIC(:,95)+CONSTANTS(:,112);
ALGEBRAIC(:,84) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,97) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,86).*STATES(:,41));
ALGEBRAIC(:,112) = ALGEBRAIC(:,97)+ CONSTANTS(:,105).*ALGEBRAIC(:,84)+CONSTANTS(:,112);
ALGEBRAIC(:,130) = CONSTANTS(:,46).*(exp(ALGEBRAIC(:,111)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,112)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,133) = CONSTANTS(:,105).*ALGEBRAIC(:,130);
RATES(:,2) = ( - ALGEBRAIC(:,10) - ALGEBRAIC(:,39))+ALGEBRAIC(:,133);
ALGEBRAIC(:,135) = ALGEBRAIC(:,120) - ALGEBRAIC(:,130);
RATES(:,40) = ALGEBRAIC(:,135);
ALGEBRAIC(:,113) = ALGEBRAIC(:,97)+ CONSTANTS(:,106).*ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,98) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,87).*STATES(:,42));
ALGEBRAIC(:,114) = ALGEBRAIC(:,98)+CONSTANTS(:,112);
ALGEBRAIC(:,134) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,113)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,114)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,137) = ALGEBRAIC(:,130) - ALGEBRAIC(:,134);
RATES(:,41) = ALGEBRAIC(:,137);
ALGEBRAIC(:,115) = ALGEBRAIC(:,98)+CONSTANTS(:,112);
ALGEBRAIC(:,116) = ALGEBRAIC(:,85)+ALGEBRAIC(:,94)+CONSTANTS(:,112);
ALGEBRAIC(:,136) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,115)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,116)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,138) = (( CONSTANTS(:,106).*ALGEBRAIC(:,128) - ALGEBRAIC(:,123)) - CONSTANTS(:,106).*ALGEBRAIC(:,134))+ALGEBRAIC(:,136);
RATES(:,31) = ALGEBRAIC(:,138);
ALGEBRAIC(:,140) = ALGEBRAIC(:,136) - ALGEBRAIC(:,117);
RATES(:,43) = ALGEBRAIC(:,140);
ALGEBRAIC(:,139) = ALGEBRAIC(:,134) - ALGEBRAIC(:,136);
RATES(:,42) = ALGEBRAIC(:,139);
RATES = RATES';
end
% Calculate algebraic variables
function ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI)
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
utilOnes = 1;
else
statesRowCount = statesSize(1);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,11) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,15) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,53).*STATES(:,7));
ALGEBRAIC(:,16) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,54).*STATES(:,8));
ALGEBRAIC(:,40) = CONSTANTS(:,3).*(exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,16)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,18) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,56).*STATES(:,10));
ALGEBRAIC(:,41) = CONSTANTS(:,4).*(exp((ALGEBRAIC(:,16)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,18)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,14) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,52).*STATES(:,3));
ALGEBRAIC(:,20) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,58).*STATES(:,12));
ALGEBRAIC(:,48) = CONSTANTS(:,11).*(exp((ALGEBRAIC(:,16)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,20)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,19) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,57).*STATES(:,11));
ALGEBRAIC(:,44) = CONSTANTS(:,7).*(exp((ALGEBRAIC(:,19)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,20)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,22) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,60).*STATES(:,14));
ALGEBRAIC(:,45) = CONSTANTS(:,8).*(exp((ALGEBRAIC(:,20)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,17) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,55).*STATES(:,9));
ALGEBRAIC(:,43) = CONSTANTS(:,6).*(exp(ALGEBRAIC(:,17)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,49) = CONSTANTS(:,12).*(exp(ALGEBRAIC(:,19)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,15)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,21) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,59).*STATES(:,13));
ALGEBRAIC(:,47) = CONSTANTS(:,10).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,19)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,42) = CONSTANTS(:,5).*(exp(ALGEBRAIC(:,18)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,17)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,50) = CONSTANTS(:,13).*(exp((ALGEBRAIC(:,18)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,46) = CONSTANTS(:,9).*(exp(ALGEBRAIC(:,22)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,21)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,51) = CONSTANTS(:,14).*(exp(ALGEBRAIC(:,21)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,17)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,23) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,61).*STATES(:,15));
ALGEBRAIC(:,24) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,62).*STATES(:,16));
ALGEBRAIC(:,52) = CONSTANTS(:,15).*(exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,24)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,26) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,64).*STATES(:,18));
ALGEBRAIC(:,53) = CONSTANTS(:,16).*(exp((ALGEBRAIC(:,24)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,26)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,28) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,66).*STATES(:,20));
ALGEBRAIC(:,60) = CONSTANTS(:,23).*(exp((ALGEBRAIC(:,24)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,28)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,27) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,65).*STATES(:,19));
ALGEBRAIC(:,56) = CONSTANTS(:,19).*(exp((ALGEBRAIC(:,27)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,28)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,30) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,68).*STATES(:,22));
ALGEBRAIC(:,57) = CONSTANTS(:,20).*(exp((ALGEBRAIC(:,28)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,25) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,63).*STATES(:,17));
ALGEBRAIC(:,55) = CONSTANTS(:,18).*(exp(ALGEBRAIC(:,25)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,61) = CONSTANTS(:,24).*(exp(ALGEBRAIC(:,27)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,23)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,29) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,67).*STATES(:,21));
ALGEBRAIC(:,59) = CONSTANTS(:,22).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,27)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,54) = CONSTANTS(:,17).*(exp(ALGEBRAIC(:,26)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,25)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,62) = CONSTANTS(:,25).*(exp((ALGEBRAIC(:,26)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,58) = CONSTANTS(:,21).*(exp(ALGEBRAIC(:,30)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,29)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,63) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,29)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,25)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,31) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,69).*STATES(:,23));
ALGEBRAIC(:,32) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,70).*STATES(:,24));
ALGEBRAIC(:,64) = CONSTANTS(:,27).*(exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,32)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,34) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,72).*STATES(:,26));
ALGEBRAIC(:,65) = CONSTANTS(:,28).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,34)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,36) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,74).*STATES(:,28));
ALGEBRAIC(:,72) = CONSTANTS(:,35).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,35) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,73).*STATES(:,27));
ALGEBRAIC(:,68) = CONSTANTS(:,31).*(exp((ALGEBRAIC(:,35)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,38) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,76).*STATES(:,30));
ALGEBRAIC(:,69) = CONSTANTS(:,32).*(exp((ALGEBRAIC(:,36)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,33) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,71).*STATES(:,25));
ALGEBRAIC(:,67) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,33)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,74) = CONSTANTS(:,36).*(exp(ALGEBRAIC(:,35)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,31)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,37) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,75).*STATES(:,29));
ALGEBRAIC(:,71) = CONSTANTS(:,34).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,35)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,66) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,33)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,76) = CONSTANTS(:,37).*(exp((ALGEBRAIC(:,34)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,70) = CONSTANTS(:,33).*(exp(ALGEBRAIC(:,38)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,37)+ALGEBRAIC(:,11))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,78) = CONSTANTS(:,38).*(exp(ALGEBRAIC(:,37)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,33)+ALGEBRAIC(:,14))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,75) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,77).*STATES(:,4));
ALGEBRAIC(:,77) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,78).*STATES(:,5));
ALGEBRAIC(:,79) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,79).*STATES(:,6));
ALGEBRAIC(:,81) = CONSTANTS(:,40).*(exp(ALGEBRAIC(:,79)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,75)+ALGEBRAIC(:,77))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,73) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,80) = CONSTANTS(:,39).*(exp((ALGEBRAIC(:,73)+ALGEBRAIC(:,77))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,79)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,94) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,88).*STATES(:,43));
ALGEBRAIC(:,99) = ALGEBRAIC(:,94)+CONSTANTS(:,112);
ALGEBRAIC(:,89) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,80).*STATES(:,35));
ALGEBRAIC(:,88) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,92).*STATES(:,32));
ALGEBRAIC(:,100) = ALGEBRAIC(:,89)+ALGEBRAIC(:,88)+CONSTANTS(:,112);
ALGEBRAIC(:,117) = CONSTANTS(:,49).*(exp(ALGEBRAIC(:,99)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,100)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,119) = ALGEBRAIC(:,117);
ALGEBRAIC(:,87) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,90).*STATES(:,34));
ALGEBRAIC(:,101) = ALGEBRAIC(:,89)+ALGEBRAIC(:,87)+CONSTANTS(:,112);
ALGEBRAIC(:,90) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,81).*STATES(:,36));
ALGEBRAIC(:,102) = ALGEBRAIC(:,90)+CONSTANTS(:,112);
ALGEBRAIC(:,118) = CONSTANTS(:,41).*(exp(ALGEBRAIC(:,101)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,102)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,121) = - ALGEBRAIC(:,118);
ALGEBRAIC(:,122) = ALGEBRAIC(:,117) - ALGEBRAIC(:,118);
ALGEBRAIC(:,93) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,84).*STATES(:,39));
ALGEBRAIC(:,103) = ALGEBRAIC(:,93)+CONSTANTS(:,112);
ALGEBRAIC(:,86) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,91).*STATES(:,33));
ALGEBRAIC(:,95) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,85).*STATES(:,40));
ALGEBRAIC(:,104) = ALGEBRAIC(:,86)+ALGEBRAIC(:,95)+CONSTANTS(:,112);
ALGEBRAIC(:,120) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,103)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,104)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,124) = ALGEBRAIC(:,120);
ALGEBRAIC(:,85) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,89).*STATES(:,31));
ALGEBRAIC(:,105) = ALGEBRAIC(:,90)+ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,91) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,82).*STATES(:,37));
ALGEBRAIC(:,106) = ALGEBRAIC(:,91)+CONSTANTS(:,112);
ALGEBRAIC(:,123) = CONSTANTS(:,43).*(exp(ALGEBRAIC(:,105)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,106)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,126) = ALGEBRAIC(:,123);
ALGEBRAIC(:,8) = ( CONSTANTS(:,101).*CONSTANTS(:,102)).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,9) = ( CONSTANTS(:,101).*CONSTANTS(:,102)).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,10) = CONSTANTS(:,1).*(exp(ALGEBRAIC(:,8)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,12) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,39) = CONSTANTS(:,2).*(exp((ALGEBRAIC(:,12)+ALGEBRAIC(:,21)+ALGEBRAIC(:,29)+ALGEBRAIC(:,37))./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,11)+ALGEBRAIC(:,21)+ALGEBRAIC(:,29)+ALGEBRAIC(:,37))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,82) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,51).*STATES(:,1));
ALGEBRAIC(:,107) = ALGEBRAIC(:,90)+ CONSTANTS(:,104).*ALGEBRAIC(:,82)+CONSTANTS(:,112);
ALGEBRAIC(:,92) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,83).*STATES(:,38));
ALGEBRAIC(:,108) = ALGEBRAIC(:,92)+CONSTANTS(:,112);
ALGEBRAIC(:,125) = CONSTANTS(:,42).*(exp(ALGEBRAIC(:,107)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,108)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,127) = - CONSTANTS(:,104).*ALGEBRAIC(:,125);
ALGEBRAIC(:,129) = ALGEBRAIC(:,118) - ALGEBRAIC(:,125);
ALGEBRAIC(:,109) = ALGEBRAIC(:,92)+CONSTANTS(:,112);
ALGEBRAIC(:,110) = ALGEBRAIC(:,93)+ CONSTANTS(:,106).*ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,128) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,109)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,110)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,131) = ALGEBRAIC(:,125) - ALGEBRAIC(:,128);
ALGEBRAIC(:,132) = ALGEBRAIC(:,128) - ALGEBRAIC(:,120);
ALGEBRAIC(:,111) = ALGEBRAIC(:,95)+CONSTANTS(:,112);
ALGEBRAIC(:,84) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,50).*STATES(:,2));
ALGEBRAIC(:,97) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,86).*STATES(:,41));
ALGEBRAIC(:,112) = ALGEBRAIC(:,97)+ CONSTANTS(:,105).*ALGEBRAIC(:,84)+CONSTANTS(:,112);
ALGEBRAIC(:,130) = CONSTANTS(:,46).*(exp(ALGEBRAIC(:,111)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,112)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,133) = CONSTANTS(:,105).*ALGEBRAIC(:,130);
ALGEBRAIC(:,135) = ALGEBRAIC(:,120) - ALGEBRAIC(:,130);
ALGEBRAIC(:,113) = ALGEBRAIC(:,97)+ CONSTANTS(:,106).*ALGEBRAIC(:,85)+CONSTANTS(:,112);
ALGEBRAIC(:,98) = CONSTANTS(:,101).*CONSTANTS(:,102).*log( CONSTANTS(:,87).*STATES(:,42));
ALGEBRAIC(:,114) = ALGEBRAIC(:,98)+CONSTANTS(:,112);
ALGEBRAIC(:,134) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,113)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,114)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,137) = ALGEBRAIC(:,130) - ALGEBRAIC(:,134);
ALGEBRAIC(:,115) = ALGEBRAIC(:,98)+CONSTANTS(:,112);
ALGEBRAIC(:,116) = ALGEBRAIC(:,85)+ALGEBRAIC(:,94)+CONSTANTS(:,112);
ALGEBRAIC(:,136) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,115)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,116)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,138) = (( CONSTANTS(:,106).*ALGEBRAIC(:,128) - ALGEBRAIC(:,123)) - CONSTANTS(:,106).*ALGEBRAIC(:,134))+ALGEBRAIC(:,136);
ALGEBRAIC(:,140) = ALGEBRAIC(:,136) - ALGEBRAIC(:,117);
ALGEBRAIC(:,139) = ALGEBRAIC(:,134) - ALGEBRAIC(:,136);
ALGEBRAIC(:,1) = CONSTANTS(:,104).*STATES(:,38)+ CONSTANTS(:,104).*STATES(:,39)+ CONSTANTS(:,105).*STATES(:,40);
ALGEBRAIC(:,2) = STATES(:,1)./CONSTANTS(:,107);
ALGEBRAIC(:,3) = STATES(:,2)./CONSTANTS(:,108);
ALGEBRAIC(:,4) = STATES(:,31)./CONSTANTS(:,110);
ALGEBRAIC(:,5) = STATES(:,33)./CONSTANTS(:,107);
ALGEBRAIC(:,6) = STATES(:,34)./CONSTANTS(:,107);
ALGEBRAIC(:,7) = STATES(:,32)./CONSTANTS(:,107);
ALGEBRAIC(:,13) = CONSTANTS(:,2).*(exp(ALGEBRAIC(:,12)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,101).*CONSTANTS(:,102))));
ALGEBRAIC(:,83) = - CONSTANTS(:,94).*CONSTANTS(:,103).*ALGEBRAIC(:,81);
ALGEBRAIC(:,96) = CONSTANTS(:,49).*(exp(ALGEBRAIC(:,94)./( CONSTANTS(:,101).*CONSTANTS(:,102))) - exp((ALGEBRAIC(:,89)+ALGEBRAIC(:,88))./( CONSTANTS(:,101).*CONSTANTS(:,102))));
end
% Pad out or shorten strings to a set length
function strout = strpad(strin)
req_length = 160;
insize = size(strin,2);
if insize > req_length
strout = strin(1:req_length);
else
strout = [strin, blanks(req_length - insize)];
end
end
