- Author:
- elias-soltani <egha355@aucklanduni.ac.nz>
- Date:
- 2021-05-03 09:23:08+12:00
- Desc:
- Added files for morphing between body coorinates and human body
- Permanent Source URI:
- https://models.fieldml.org/workspace/651/rawfile/db3cda4a210e7748c42b18bf3daad447bd0e85fa/README.rst
In this workspace, we have the `Scaffold Maker <https://github.com/ABI-Software/scaffoldmaker>`_ workflow and configuration files needed to produce the human whole body-scaffold for the `SPARC <https://commonfund.nih.gov/sparc>`_ project.
.. image:: body_coordinates.png
:width: 50%
:alt: Rendering of the body coordinates.
.. image:: human_morphed.png
:width: 50%
:alt: Rendering of the human whole-body scaffold.
A generic solid cylinder mesh template has been created and forms the core of the whole body scaffold. Preliminary fitting to human geometry has been performed. While the body coordinates field is laid out in the regular coordinates, the geometric coordinates field is fitted to the body of the animal of interest (human here) including consistent positioning of interior layers such as between the core cavities and outside layers, at the diaphragm and at each organ fiducial point obtained from the image data.
Data used for fitting was obtained from `lifescience database <https://lifesciencedb.jp/>`_ , including diaphragm, spinal cord, skin and vagus nerves.
Please see the `SPARC Portal <https://sparc.science>`_ for more details about the SPARC project.
