- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2022-03-31 10:48:40+13:00
- Desc:
- Add open channel IV of HH models; Add simulation and plot python scripts
- Permanent Source URI:
- https://models.fieldml.org/workspace/64f/rawfile/ab2962b8796666ad9938a2577611c954f006b5fd/BG/channelK_BG.cellml
<?xml version='1.0' encoding='UTF-8'?>
<!-- The BG describes the current (ionic flux) through the ion channel K-->
<model name="channelK_BG" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="../cellLib/BG/units_BG.cellml">
<units name="J_per_mol" units_ref="J_per_mol"/>
<units name="fmol_per_sec" units_ref="fmol_per_sec"/>
<units name="per_fmol" units_ref="per_fmol"/>
<units name="fmol" units_ref="fmol"/>
</import>
<import xlink:href="../cellLib/BG/channelX_BG.cellml">
<component component_ref="channelX_BG" name="channelX_BG"/>
</import>
<import xlink:href="../cellLib/BG/Se_BG.cellml">
<component component_ref="Se_BG" name="Ki_BG"/>
</import>
<import xlink:href="../cellLib/BG/Se_BG.cellml">
<component component_ref="Se_BG" name="Ke_BG"/>
</import>
<component name="channelK_BG">
<!--Parameters-->
<variable name="T" private_interface="out" public_interface="in" units="kelvin"/>
<variable name="kappa_K" private_interface="out" public_interface="in" units="fmol_per_sec"/>
<variable name="z_K" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="K_i_K" private_interface="out" public_interface="in" units="per_fmol"/>
<variable name="q_i_K_init" private_interface="out" public_interface="in" units="fmol"/>
<variable name="K_e_K" private_interface="out" public_interface="in" units="per_fmol"/>
<variable name="q_e_K_init" private_interface="out" public_interface="in" units="fmol"/>
<!--Inputs-->
<variable name="t" private_interface="out" public_interface="in" units="second"/>
<variable name="mu_p" private_interface="out" public_interface="in" units="J_per_mol"/>
<variable name="A_g_K" private_interface="out" public_interface="in" units="J_per_mol"/>
<!--Outputs-->
<variable name="v_p_K" private_interface="in" public_interface="out" units="fmol_per_sec"/>
</component>
<group>
<relationship_ref relationship="encapsulation"/>
<component_ref component="channelK_BG">
<component_ref component="channelX_BG"/>
<component_ref component="Ki_BG"/>
<component_ref component="Ke_BG"/>
</component_ref>
</group>
<connection>
<map_components component_1="channelK_BG" component_2="channelX_BG"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="kappa_K" variable_2="kappa_X"/>
<map_variables variable_1="z_K" variable_2="z_X"/>
<map_variables variable_1="mu_p" variable_2="mu_p"/>
<map_variables variable_1="A_g_K" variable_2="A_g_X"/>
<map_variables variable_1="v_p_K" variable_2="v_p_X"/>
</connection>
<connection>
<map_components component_1="channelK_BG" component_2="Ki_BG"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="K_i_K" variable_2="K"/>
<map_variables variable_1="q_i_K_init" variable_2="q_init"/>
</connection>
<connection>
<map_components component_1="channelK_BG" component_2="Ke_BG"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="t" variable_2="t"/>
<map_variables variable_1="K_e_K" variable_2="K"/>
<map_variables variable_1="q_e_K_init" variable_2="q_init"/>
</connection>
<connection>
<map_components component_1="channelX_BG" component_2="Ki_BG"/>
<map_variables variable_1="mu_i_X" variable_2="mu"/>
<map_variables variable_1="v_i_X" variable_2="v"/>
</connection>
<connection>
<map_components component_1="channelX_BG" component_2="Ke_BG"/>
<map_variables variable_1="mu_e_X" variable_2="mu"/>
<map_variables variable_1="v_e_X" variable_2="v"/>
</connection>
</model>
