Location: Activation of the Liver Glycogen Phosphorylase by Ca2+ Oscillations: a Theoretical Study @ 9cc2d56056c8 / gall_2000.session.xml

Author:
dave <dave@bcs.co.nz>
Date:
2013-01-04 12:32:48+13:00
Desc:
Equation 8 from original paper was wrong in model; correctly define units for all variables.
Permanent Source URI:
https://models.fieldml.org/workspace/35d/rawfile/9cc2d56056c85c516e53c1d590fe34916a8b4a48/gall_2000.session.xml
Compare... Download Source 

<?xml version="1.0"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph3"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph1"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n1"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n2"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="gall_2000.cellml#Pha_Pha"/></variable></rdf:Description><rdf:Description rdf:nodeID="n3"><rdf:first><rdf:Description rdf:nodeID="n4"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n5"><rdf:rest><rdf:Description rdf:nodeID="n6"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n1"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n6"><rdf:rest><rdf:Description rdf:nodeID="n7"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n8"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph3"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n1"/></activegraph></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/loadedModels"><rdf:_1><rdf:Description rdf:about="gall_2000.cellml"/></rdf:_1></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n5"/></rdf:first></rdf:Description><rdf:Description rdf:about="gall_2000.cellml"><modelfrozen xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</modelfrozen><modelname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">gall_2000</modelname><modelfrozen xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</modelfrozen><derivedmodels xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n9"/></derivedmodels><modelname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">gall_2000</modelname><derivedmodels xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n9"/></derivedmodels></rdf:Description><rdf:Description rdf:nodeID="n4"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n10"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph3"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n11"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n12"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n13"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#dbb1b1</colour></rdf:Description><rdf:Description rdf:nodeID="n14"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n11"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n7"><rdf:rest><rdf:Description rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n15"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n8"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n12"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="gall_2000.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n15"><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Traces against time (minutes)</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Traces against time (minutes)</graphname><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n16"/></traces></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/displayGraphs"><rdf:first><rdf:Description rdf:nodeID="n5"/></rdf:first></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/pcenv/"><rdf:Description rdf:nodeID="n15"/></activegraph></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph1"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n15"/></activegraph></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph2"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n17"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="gall_2000.cellml#environment_time"/></variable></rdf:Description><rdf:Description rdf:nodeID="n18"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#scatter"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n17"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n2"/></variable><glyph xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#nonstandard-none"/></glyph><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#ff3300</colour></rdf:Description><rdf:Description rdf:nodeID="n13"><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="gall_2000.cellml#Z_Z"/></variable></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_key_graph1"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/loadedModels"><rdf:_2><rdf:Description rdf:about="gall_2000.cellml"/></rdf:_2></rdf:Description><rdf:Description rdf:nodeID="n8"><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Clickable SVG: Click image to toggle traces above</graphname><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Clickable SVG: Click image to toggle traces above</graphname><externalurl xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">gall_2000.xul</externalurl><externalurl xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">gall_2000.xul</externalurl></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/intergraph2"><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/opencell/splitter/graph_sel_graph2"><activegraph xmlns="http://www.cellml.org/tools/opencell/"><rdf:Description rdf:nodeID="n8"/></activegraph></rdf:Description><rdf:Description rdf:nodeID="n19"><rdf:rest><rdf:Description rdf:nodeID="n14"/></rdf:rest><rdf:first><rdf:Description rdf:nodeID="n18"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n10"><type xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#line"/></type><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:nodeID="n20"/></variable><variable xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:nodeID="n21"/></variable><colour xmlns="http://www.cellml.org/metadata/graphs/1.0#" xml:lang="en">#099999</colour></rdf:Description><rdf:Description rdf:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph2"><splitterState_nextHeight xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">0</splitterState_nextHeight><splitterState_collapsedAfter xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">true</splitterState_collapsedAfter></rdf:Description><rdf:Description rdf:nodeID="n16"><rdf:first><rdf:Description rdf:nodeID="n19"/></rdf:first></rdf:Description><rdf:Description rdf:nodeID="n1"><graphname xmlns="http://www.cellml.org/tools/opencell/" xml:lang="en">Untitled</graphname><decoration xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#none"/></decoration><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#x-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><scaling xmlns="http://www.cellml.org/metadata/graphs/1.0#y-"><rdf:Description rdf:about="http://www.cellml.org/metadata/graphs/1.0#identity"/></scaling><graphname xmlns="http://www.cellml.org/tools/pcenv/" xml:lang="en">Untitled</graphname><traces xmlns="http://www.cellml.org/metadata/graphs/1.0#"><rdf:Description rdf:nodeID="n3"/></traces></rdf:Description></rdf:RDF>