- Author:
- Soroush <ssaf006@aucklanduni.ac.nz>
- Date:
- 2020-05-10 21:27:00+12:00
- Desc:
- added new sedml
- Permanent Source URI:
- https://models.fieldml.org/workspace/297/rawfile/5c6d2c520a9faad399fd954401d658362d25ef03/BG/Boron-NH3.sedml
<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="3" xmlns="http://sed-ml.org/sed-ml/level1/version3" xmlns:cellml="http://www.cellml.org/cellml/1.1#">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" numberOfPoints="3000" outputEndTime="3000" outputStartTime="0">
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
<algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="0"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
</listOfAlgorithmParameters>
</algorithm>
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model" language="urn:sedml:language:cellml.1_1" source="Boron-NH3.cellml"/>
</listOfModels>
<listOfTasks>
<repeatedTask id="repeatedTask" range="once" resetModel="true">
<listOfRanges>
<vectorRange id="once">
<value> 1 </value>
</vectorRange>
</listOfRanges>
<listOfSubTasks>
<subTask order="1" task="task1"/>
</listOfSubTasks>
</repeatedTask>
<task id="task1" modelReference="model" simulationReference="simulation1"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="xDataGenerator1_1">
<listOfVariables>
<variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_1">
<listOfVariables>
<variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='NH3_i']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator1_2">
<listOfVariables>
<variable id="xVariable1_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_2">
<listOfVariables>
<variable id="yVariable1_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='NH3_o']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator2_1">
<listOfVariables>
<variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator2_1">
<listOfVariables>
<variable id="yVariable2_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='NH4_i']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator2_2">
<listOfVariables>
<variable id="xVariable2_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator2_2">
<listOfVariables>
<variable id="yVariable2_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='NH4_o']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator3_1">
<listOfVariables>
<variable id="xVariable3_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable3_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator3_1">
<listOfVariables>
<variable id="yVariable3_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='pH_i']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable3_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator3_2">
<listOfVariables>
<variable id="xVariable3_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable3_2 </ci>
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</dataGenerator>
<dataGenerator id="yDataGenerator3_2">
<listOfVariables>
<variable id="yVariable3_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='pH_o']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable3_2 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator4_1">
<listOfVariables>
<variable id="xVariable4_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable4_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator4_1">
<listOfVariables>
<variable id="yVariable4_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='J_NH3']" taskReference="repeatedTask"/>
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<ci> yVariable4_1 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator5_1">
<listOfVariables>
<variable id="xVariable5_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
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<ci> xVariable5_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator5_1">
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<ci> yVariable5_1 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator5_2">
<listOfVariables>
<variable id="xVariable5_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable5_2 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator5_2">
<listOfVariables>
<variable id="yVariable5_2" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='J_H']" taskReference="repeatedTask"/>
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<ci> yVariable5_2 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator6_1">
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<variable id="xVariable6_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
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<ci> xVariable6_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator6_1">
<listOfVariables>
<variable id="yVariable6_1" target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='alpha']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable6_1 </ci>
</math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
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<annotation>
<properties version="2" xmlns="http://www.opencor.ws/">
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<fontSize>10</fontSize>
<foregroundColor>#000000</foregroundColor>
<height>1</height>
<gridLines>
<style>dot</style>
<width>1</width>
<color>#a0a0a4</color>
</gridLines>
<legend>
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<visible>true</visible>
</legend>
<pointCoordinates>
<style>dash</style>
<width>1</width>
<color>#b0008080</color>
<fontColor>#ffffff</fontColor>
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</pointCoordinates>
<surroundingArea>
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</surroundingArea>
<title/>
<xAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</xAxis>
<yAxis>
<fontSize>9</fontSize>
<logarithmicScale>false</logarithmicScale>
<title>Conc (mol/m3)</title>
</yAxis>
<zoomRegion>
<style>solid</style>
<width>1</width>
<color>#b0800000</color>
<fontColor>#ffffff</fontColor>
<fontSize>10</fontSize>
<filled>true</filled>
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</zoomRegion>
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</annotation>
<listOfCurves>
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<annotation>
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<line>
<style>solid</style>
<width>3</width>
<color>#0072bd</color>
</line>
<symbol>
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<size>8</size>
<color>#0072bd</color>
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<annotation>
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<title>NH3_o</title>
<line>
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<symbol>
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<filled>true</filled>
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<color>#b0008080</color>
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<surroundingArea>
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</surroundingArea>
<title/>
<xAxis>
<fontSize>10</fontSize>
<logarithmicScale>false</logarithmicScale>
<title/>
</xAxis>
<yAxis>
<fontSize>9</fontSize>
<logarithmicScale>false</logarithmicScale>
<title>Conc (mol/m3)</title>
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<zoomRegion>
<style>solid</style>
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<color>#b0800000</color>
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<annotation>
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<title>NH4_i</title>
<line>
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<title/>
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<title/>
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<title>pH</title>
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<pointCoordinates>
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<title/>
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<logarithmicScale>false</logarithmicScale>
<title/>
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<yAxis>
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<logarithmicScale>false</logarithmicScale>
<title>Flux (mol/m2/s)</title>
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<zoomRegion>
<style>solid</style>
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<color>#b0800000</color>
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<title/>
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</listOfOutputs>
</sedML>
