| 2011-02-23 |
Dougal Cowan |
changed note about the session file.
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Butera, Rinzel, Smith, 1999 |
| 2011-02-22 |
Randall Britten |
Updated MATLAB to be a bit neater.
Also, to only generate one time variable for session file.
Also, to include a comment for the random seed used, the mean and standard deviation.
Used MATLAB file to generate a fresh version of butera_ten_cell_1999.cellml.
Updated session file to use updated name for time variable.
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| 2011-02-21 |
dcowan |
added a note about how to get the session file working.
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Butera, Rinzel, Smith, 1999 |
| 2011-02-21 |
dcowan |
fixed relative link to MATLAB file
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Butera, Rinzel, Smith, 1999 |
| 2011-02-21 |
dcowan |
added documentation details
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| 2011-02-18 |
Randall Britten |
Preferred version of session file, plots all 10 voltages on same graph, uses same "timeDuplicate" for all traces.
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| 2011-02-18 |
Randall Britten |
Fixed path: removed reference to lacal drive path.
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| 2011-02-18 |
Randall Britten |
Prettify XML.
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| 2011-02-18 |
Shorojeet Dasgupta |
Remove original five cell model.
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| 2011-02-18 |
Shorojeet Dasgupta |
Removed five and ten cell models as both had g_syn_e_s values all at 0.1 nS. Added ten cell model which has random values for g_syn_e_s and is used to build the session file, which is also added.
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| 2011-02-18 |
Shorojeet Dasgupta |
Changed single cell model to allow session file creation: Added 'time' variable to 'single_neuron_model' component. Added metadata ID for 'time' variable in 'environment' component, and same for voltage variable in 'membrane' component.
Pair programmed with Randall Britten.
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| 2011-02-18 |
Shorojeet Dasgupta |
Changes to MATLAB program: Added ability to repeat a random generation using seeds. Changed ouput file from XML to CellML format. Added code to allow session file creation from output file. Made code neater.
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| 2011-02-16 |
Randall Britten |
Moved XML for connections that was at end of file to now be alongside other connections.
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[files]
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Butera, Rinzel, Smith, 1999 |
| 2011-02-16 |
Randall Britten |
Prettified the XML.
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| 2011-02-16 |
Randall Britten |
"Funneling" membrane variable out to top level so that importing file can have a "local" reference to it so that session files will work.
This is progress towards working around a bug in OpenCell (see https://tracker.physiomeproject.org/show_bug.cgi?id=2840),
where session files can only refer to variables in the "top level" cellml file (i.e. can't refer to variables in imported components from session file).
Pair-programmed with Shorojeet Dasgupta.
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| 2011-02-16 |
Randall Britten |
Fixed problem with indices used for summation: Terms in sum were using same indices as paper, but sum was over j, whereas in paper, sum was over i. Now code sums over i.
Pair programmed with Shorojeet Dasgupta.
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| 2011-02-14 |
Shorojeet Dasgupta |
Adding MATLAB file to workspace. When run, asks for number of neurons to be modelled, and also asks for mean and standard deviation for the normal distribution from where g_syn_e values are randomly picked.
Then creates an XML file which can be run on CellML. Note: To run XML file on CellML, must have single cell model in same folder with same name.
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[files]
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Butera, Rinzel, Smith, 1999 |
| 2011-02-14 |
Shorojeet Dasgupta |
Corrected calculation for synapic input by making the s calculation a ds/dt calculation.
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| 2011-02-14 |
Shorojeet Dasgupta |
Corrected sum_g_syn_e_s calculation: each cell has its own such calculation now, as required by the model. Previously, there was only one such calculation for all cells.
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| 2011-02-14 |
Shorojeet Dasgupta |
Corrected sum_g_syn_e_s calculation: each cell has its own such calculation now, as required by the model. Previously, there was only one such calculation for all cells.
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| 2010-12-17 |
Randall Britten |
Merge
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Butera, Rinzel, Smith, 1999 |
| 2010-12-17 |
Randall Britten |
Backed out changeset: 49fc5b545042
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| 2010-12-17 |
Randall Britten |
Backed out changeset: 9994717694dd
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| 2010-12-17 |
Shorojeet Dasgupta |
Added a dummy component ("synaptic_coupling") to allow the single cell version of the model to be work independently. Previously, it had to be used as an import for the 5 and 10 cell models.
synaptic_coupling component adds 4 values that represent 4 imaginary neighbouring neurons to set the value of sum_g_syn_e_s.
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[files]
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| 2010-12-17 |
Shorojeet Dasgupta |
Added a dummy component ("synaptic_coupling") to allow the single cell version of the model to be work independently. Previously, it had to be used as an import for the 5 and 10 cell models.
synaptic_coupling component adds 4 values that represent 4 imaginary neighbouring neurons to set the value of sum_g_syn_e_s.
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[tgz]
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| 2010-12-15 |
Shorojeet Dasgupta |
Added a dummy component ("synaptic_coupling") to allow the single cell version of the model to be used independently, previously, it was only usable indirectly, by being imported from the 5 and 10 cell models.
Planning to change synaptic_coupling so that it just sets the value of sum_g_syn_e_s directly, rather than adding 4 values that represent 4 imaginary neighbouring neurons.
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| 2010-08-07 |
Catherine Lloyd |
Added metadata to the single cell model.
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Butera, Rinzel, Smith, 1999 |
| 2010-07-17 |
Catherine Lloyd |
Added documentation to the single cell model.
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Butera, Rinzel, Smith, 1999 |
| 2010-07-17 |
Catherine Lloyd |
Adding models and images to the workspace.
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