- Author:
- elias-soltani <egha355@aucklanduni.ac.nz>
- Date:
- 2021-12-02 10:26:12+13:00
- Desc:
- Initial commit
- Permanent Source URI:
- https://models.fieldml.org/workspace/7da/rawfile/6f9785b193282f78d7a2064db9ed164f0aeaf8d4/README.rst
In this workspace, we have the automatic workflow and configuration files for inserting organs needed to produce the rat whole-body scaffold with embedded organs for the `SPARC <https://commonfund.nih.gov/sparc>`_ project.
.. image:: thumbnail.png
:width: 75%
:alt: Rendering of the rat whole-body scaffold with embedded organs.
A MAP Client workflow is created with a new step (organinserter) in python language to automate insertion of 3D organs into the whole-body scaffolds. The whole-body scaffold along with the organs are passed to the workflow and then it finds the common fiducial markers in the whole-body and each organ. These fiducials then are used to register the organ into the body. The embedded organs include lungs, heart, stomach, bladder and colon.
Please see the `SPARC Portal <https://sparc.science>`_ for more details about the SPARC project.
