- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2024-09-27 14:26:17+12:00
- Desc:
- Updating captions
- Permanent Source URI:
- https://models.fieldml.org/workspace/702/rawfile/013a1f6b66817f0be90630420f0c7fd83618cd18/RST/Fig8_f.rst
About this model
====================
:Original publication: `Kernik et al. (2019)`_:
"A computational model of induced pluripotent stem-cell derived cardiomyocytes
incorporating experimental variability from multiple data sources" J Physiol. 2019 Sep 1; 597(17): 4533-4564.
:DOI: https://dx.doi.org/10.1113%2FJP277724
.. _`Kernik et al. (2019)`: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6767694/
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Figure 08
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Pacemaker/funny current (:math:`I_f`) model
****************************************************************************
`Current_If.cellml`_ is the main CellML file which contains the formulation for the funny/pacemaker current. Its associated SED-ML file contains all the simulation settings.
To execute the code, all the files related to this channel need to be downloaded in a same folder:
1. Fig8_f.py
2. Current_If.cellml
3. Current_If.sedml
4. parameter_If.cellml
5. parameter.cellml
6. gating_If.cellml
7. unit.cellml
To reproduce Figure 8, save all the files to the same folder and
execute the following script from the command line:
``$ cd [PathToThisFile]``
``$ [PathToOpenCOR]/pythonshell Fig8_f.py``
.. figure:: figures/Figure8_f.png
:width: 85%
:align: center
:alt: Pacemaker/funny current model
A, steady-state activation curve. B, Time constant of :math:`I_f` activation gate. C, I-V curves.
.. _`Current_If.cellml`: https://models.physiomeproject.org/workspace/702/file/98f5f62a7e8d3e057f3d24027e38ed91a2a185ed/Current_If.cellml
.. _`Fig8_f.py`: https://models.physiomeproject.org/workspace/702/file/98f5f62a7e8d3e057f3d24027e38ed91a2a185ed/Fig8_f.py
