- Author:
- Zohreh Ekhlasi <zekh167@aucklanduni.ac.nz>
- Date:
- 2020-11-27 08:32:53+13:00
- Desc:
- files for cat bladder scaffold workflow added.
- Permanent Source URI:
- https://models.fieldml.org/workspace/618/rawfile/52ef1aed587aaa410ecea6aa3a3733675b85acd2/Mesh-settings.json
{
"generator_settings": {
"deleteElementRanges": "",
"displayAxes": true,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": false,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": false,
"displaySurfacesWireframe": false,
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path LUT": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 5.000000000000000e-01 0.000000000000000e+00\n 0.000000000000000e+00 1.500000000000000e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 2\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 5.000000000000000e-01 0.000000000000000e+00\n 1.500000000000000e+01 1.500000000000000e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 3\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 0.000000000000000e+00 5.000000000000000e-01 0.000000000000000e+00\n 3.000000000000000e+01 1.500091587818110e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 4\n 0.000000000000000e+00 1.144404117203521e-01 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 6.355774135143004e-01 5.000000000000000e-01 0.000000000000000e+00\n 4.500000000000000e+01 1.541684689228600e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 5\n 2.350040139363475e-01 2.945367957799614e-01 0.000000000000000e+00 0.000000000000000e+00\n 1.305161709030968e+00 1.178100316950003e+00 5.000000000000000e-01 0.000000000000000e+00\n 6.080161407578931e+01 1.504283927466105e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 6\n 5.818187863711748e-01 3.084680969440184e-01 0.000000000000000e+00 0.000000000000000e+00\n 2.362511828969463e+00 8.765743676154922e-01 5.000000000000000e-01 0.000000000000000e+00\n 7.508271276449219e+01 1.457403662563503e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 7\n 8.500000000000000e-01 -4.846584887457848e-01 0.000000000000000e+00 0.000000000000000e+00\n 3.050000000000000e+00 -1.289816067190548e-01 5.000000000000000e-01 0.000000000000000e+00\n 8.994000000000000e+01 1.740282317866132e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 8\n -6.157097879109876e-01 -1.983664117616201e+00 0.000000000000000e+00 0.000000000000000e+00\n 1.834551297306434e+00 -3.066002243193128e+00 5.000000000000000e-01 0.000000000000000e+00\n 1.097658673725990e+02 2.039491043973268e+01 0.000000000000000e+00 -5.000000000000000e-01\nNode: 9\n -3.130559027323012e+00 -3.046034336594828e+00 0.000000000000000e+00 0.000000000000000e+00\n -3.184797600773866e+00 -6.972695530016804e+00 5.000000000000000e-01 0.000000000000000e+00\n 1.304928519110416e+02 2.105905831573199e+01 0.000000000000000e+00 -5.000000000000000e-01\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": false,
"Length": 1.0,
"Number of elements": 8
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-4",
"name": "urinary bladder",
"ontId": "FMA:15900"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "5-8",
"name": "urethra",
"ontId": "ILX:0733022"
}
]
},
"Include ureter": true,
"Include urethra": true,
"Major diameter": 30.0,
"Minor diameter": 25.0,
"Neck angle degrees": 45,
"Neck diameter 1": 5.0,
"Neck diameter 2": 4.0,
"Number of elements along bladder": 12,
"Number of elements along urethra": 8,
"Number of elements around": 12,
"Number of elements through wall": 1,
"Number of elements ureter radial": 2,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Ureter": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 2,
"Number of elements around ostium": 8,
"Number of elements through wall": 1,
"Number of vessels": 1,
"Ostium diameter": 2.0,
"Ostium inter-vessel distance": 0.8,
"Ostium inter-vessel height": 0.0,
"Ostium length": 1.0,
"Ostium wall thickness": 0.5,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use cross derivatives": false,
"Use linear through ostium wall": true,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": 0.0,
"Vessel end length factor": 1.0,
"Vessel inner diameter": 0.8,
"Vessel wall thickness": 0.25
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Ureter position around": 0.67,
"Ureter position down": 0.83,
"Urethra diameter 1": 1.5,
"Urethra diameter 2": 1.0,
"Urethra wall thickness": 0.5,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 0.5
},
"scaffoldTypeName": "3D Bladder with Urethra 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": false,
"displayDataMarkerNames": false,
"displayDataMarkerPoints": false,
"displayDataPoints": false,
"displayDataRadius": false
}
}
