- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2015-05-22 15:58:15+12:00
- Desc:
- testing repeated tasks
- Permanent Source URI:
- https://models.fieldml.org/w/andre/testing-Sed-ML-nesting/rawfile/f20fe7a4f4c1f89b15db184e365350de725ee715/nest-scan.xml
<?xml version="1.0" encoding="utf-8"?>
<!-- Written by libSedML v1.1.4397.34340 see http://libsedml.sf.net -->
<sedML level="1" version="1" xmlns="http://sed-ml.org/">
<listOfSimulations>
<oneStep id="steady1">
<algorithm kisaoID="KISAO:0000282" />
</oneStep>
<nestedSimulation id="nested1" resetModel="false" originalTask="task3" range="current">
<ranges>
<vectorRange id="current">
<value>1</value>
<value>5</value>
<value>10</value>
<value>50</value>
<value>60</value>
<value>70</value>
<value>80</value>
<value>90</value>
<value>100</value>
</vectorRange>
</ranges>
<changes>
<setValue target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J1_KK2']">
<listOfVariables>
<variable id="val" name="current loop value" target="//*[@id='current']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> val </ci>
</math>
</setValue>
</changes>
</nestedSimulation>
<nestedSimulation id="nested2" resetModel="false" originalTask="task2" range="current1">
<ranges>
<uniformRange id="current1" start="1" end="40" numberOfPoints="100" />
</ranges>
<changes>
<setValue target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J4_KK5']" range="current1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> current1 </ci>
</math>
</setValue>
</changes>
</nestedSimulation>
</listOfSimulations>
<listOfModels>
<model id="model1" language="urn:sedml:language:sbml" source="model1.xml" />
</listOfModels>
<listOfTasks>
<task id="task1" modelReference="model1" simulationReference="nested1" />
<task id="task2" modelReference="model1" simulationReference="steady1" />
<task id="task3" modelReference="model1" simulationReference="nested2" />
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="J4_KK5_1" name="J4_KK5">
<listOfVariables>
<variable id="J4_KK5" name="J4_KK5" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J4_KK5']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> J4_KK5 </ci>
</math>
</dataGenerator>
<dataGenerator id="J1_KK2_1" name="J1_KK2">
<listOfVariables>
<variable id="J1_KK2" name="J1_KK2" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter[@id='J1_KK2']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> J1_KK2 </ci>
</math>
</dataGenerator>
<dataGenerator id="MKK_1" name="MKK">
<listOfVariables>
<variable id="MKK" name="MKK" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='MKK']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> MKK </ci>
</math>
</dataGenerator>
<dataGenerator id="MKK_P_1" name="MKK_P">
<listOfVariables>
<variable id="MKK_P" name="MKK_P" taskReference="task1" target="/sbml:sbml/sbml:model/sbml:listOfSpecies/sbml:species[@id='MKK_P']" />
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> MKK_P </ci>
</math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1" name="Steady State Scan (Boris 2D)">
<listOfCurves>
<curve id="curve1" logX="false" logY="false" xDataReference="J4_KK5_1" yDataReference="MKK_1" />
<curve id="curve2" logX="false" logY="false" xDataReference="J4_KK5_1" yDataReference="MKK_P_1" />
</listOfCurves>
</plot2D>
<report id="report1" name="Steady State Values (Boris2D)">
<listOfDataSets>
<dataSet id="col0" dataReference="J4_KK5_1" label="" />
<dataSet id="col1" dataReference="J1_KK2_1" label="" />
<dataSet id="col2" dataReference="MKK_1" label="" />
<dataSet id="col3" dataReference="MKK_P_1" label="" />
</listOfDataSets>
</report>
</listOfOutputs>
</sedML>