Location: Some test SED-ML to play with the nested proposal @ 468e44fa0737 / sin_approximations_sedml-nested-Frank.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2012-05-25 14:41:26+02:00

Desc:

adding initial SED-ML describing the nested tasks from nestedTask-cellType-stimulusTime-ORd.xml as 3*3=9 separate tasks with 9 different CellML models. Runs in SED-ML Web Tools to produce the expected action potentials.

Permanent Source URI:

https://models.fieldml.org/w/andre/testing-Sed-ML-nesting/rawfile/468e44fa073725dfbb7fa349f7ef61b42bc7ba38/sin_approximations_sedml-nested-Frank.xml

<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/" xmlns:math="http://www.w3.org/1998/Math/MathML"
	level="1" version="1">
	<listOfSimulations>
		<uniformTimeCourse id="simulation1" initialTime="0"
			outputStartTime="0" outputEndTime="6.283185307179586232"
			numberOfPoints="15">
			<algorithm kisaoID="KISAO:0000019" />
		</uniformTimeCourse>
        <nestedSimulation id="nestedVectorRange" resetModel="true" 
            originalTask="task1" range="current">
            <ranges>
                <uniformRange id="current" start="-2" end="2" numberOfPoints="5" />
            </ranges>
            <changes>
                <setValue target="/cellml:model/cellml:component[@name='deriv_approx_sin']/cellml:variable[@name='sin']/@initial_value">
                    <listOfVariables>
                        <variable id="loopValue" name="current loop value"
                            target="#current"/>
                    </listOfVariables>
                    <math xmlns="http://www.w3.org/1998/Math/MathML">
                        <ci>loopValue</ci>
                    </math>
                </setValue>
            </changes>
        </nestedSimulation>
	</listOfSimulations>
	<listOfModels>
		<model id="model1" name="sine_approximations" language="urn:sedml:language:cellml"
			source="http://models.cellml.org/w/andre/sine/rawfile/796d266c5f2a03e7645b3a4bc11f824cf064da5c/sin_approximations.xml" />
	</listOfModels>

	<listOfTasks>
		<task 
            id="task1" 
            name="Sine Waves"
            modelReference="model1"
            simulationReference="simulation1" />
		<task 
            id="task2" 
            name="Nested Scan" 
            modelReference="model1"
            simulationReference="nestedVectorRange" />
	</listOfTasks>
	<listOfDataGenerators>
		<dataGenerator id="dgX" name="X">
			<listOfVariables>
				<variable id="x" taskReference="task2"
					target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='x']" />
			</listOfVariables>
			<math:math>
				<math:ci>x</math:ci>
			</math:math>
		</dataGenerator>

		<dataGenerator id="dgSin2" name="Derivative approximation">
			<listOfVariables>
				<variable id="sin2" taskReference="task2"
					target="/cellml:model/cellml:component[@name='main']/cellml:variable[@name='sin2']" />
			</listOfVariables>
			<math:math>
				<math:ci>sin2</math:ci>
			</math:math>
		</dataGenerator>
	</listOfDataGenerators>

	<listOfOutputs>
		<plot2D id="plot1" name="Scan Results">
			<listOfCurves>
				<curve id="c1" logX="false" logY="false" xDataReference="dgX"
					yDataReference="dgSin2" />
			</listOfCurves>
		</plot2D>
	</listOfOutputs>
</sedML>