- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2012-09-25 12:45:09+12:00
- Desc:
- starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module.
- Permanent Source URI:
- https://models.fieldml.org/w/andre/VPH-MIP/rawfile/036dadde90835505fa089b9d33be0bf5b4e6db24/supplement-abbrev.xml
<?xml version="1.0" encoding="iso-8859-1"?>
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#"
xmlns:csim="http://cellml.sourceforge.net/CellMLSimulator/#">
<rdf:Description rdf:ID="andre">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>david.nickerson@nus.edu.sg</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>National University of Singapore</vCard:Orgname>
<vCard:Orgunit>Division of Bioengineering</vCard:Orgunit>
</vCard:ORG>
</rdf:Description>
<rdf:Description rdf:ID="andre2">
<vCard:FN>D P Nickerson</vCard:FN>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>biendp@nus.edu.sg</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
</rdf:Description>
<rdf:Description rdf:ID="andre3">
<vCard:N rdf:parseType="Resource">
<vCard:Given>Andre</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>david.nickerson@nus.edu.sg</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>National University of Singapore</vCard:Orgname>
<vCard:Orgunit>Division of Bioengineering</vCard:Orgunit>
</vCard:ORG>
</rdf:Description>
<rdf:Description>
<csim:referenceDescription>
<rdf:Description rdf:ID="reference-description">
<dc:title>
Reference Description of a HH-based Modelling Study
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
This is a complete description of the models and numerical experiments performed in this Hodgkin & Huxley based modelling article. Herein you will find all the information required to completely recreate and validate the work presented in the article.
</rdf:value>
</dcterms:abstract>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
This is a demonstration of the complete specification of a reference description of an entire cellular electrophysiology model publication. In this reference description you will find descriptions and results of simulation experiments performed to validate the base model upon which this fictitious modelling article, as well as some fancy extensions and modifications of the base model along with the novel insights obtained thenceforth.
</rdf:value>
</dcterms:description>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
The reference description can be browsed via the tree hierarchy over on the left hand side of the page or by navigating from the list of tasks given below. All you need to do is assume that there is an associated, peer-reviewed article which summarises this reference description and perhaps provides some further analysis of the novel insights mentioned above :)
</rdf:value>
</dcterms:description>
<dc:creator rdf:resource="#andre"/>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2008-07-16</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Division of Bioengineering, National University of Singapore
</dc:publisher>
<csim:citation rdf:parseType="Resource">
<csim:authors>
<rdf:Seq>
<rdf:li rdf:parseType="Resource">
<dc:creator rdf:resource="#andre"/>
</rdf:li>
<rdf:li rdf:parseType="Resource">
<dc:creator rdf:resource="#andre2"/>
</rdf:li>
<rdf:li rdf:parseType="Resource">
<dc:creator rdf:resource="#andre3"/>
</rdf:li>
</rdf:Seq>
</csim:authors>
<dc:title>
Investigation of membrane conductance and ion concentrations using Hodgkin & Huxley's squid axon model
</dc:title>
<dcterms:issued>2021</dcterms:issued>
<dcterms:bibliographicCitation>
Fan J Eve Cool. 2021 Jun;1(1):12-67
</dcterms:bibliographicCitation>
</csim:citation>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Escaped the HTML code in the description in order to get this RDF code to validate.
</rdf:value>
<cmeta:modifier rdf:resource="#andre"/>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2008-07-16</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Re-wording some bits and pieces in order to add apostrophes (') to the text in order to test the escaping when generating the JSON reference description.
</rdf:value>
<cmeta:modifier rdf:resource="#andre"/>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2008-07-23</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding in the potassium channel validation study.
</rdf:value>
<cmeta:modifier rdf:resource="#andre"/>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding in the membrane conductance study.
</rdf:value>
<cmeta:modifier rdf:resource="#andre2"/>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2008-08-14</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding in the ion concentration study.
</rdf:value>
<cmeta:modifier rdf:resource="#andre3"/>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2008-08-14</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<!-- use a collection because:
(http://www.w3schools.com/rdf/rdf_collections.asp)
As seen in the previous chapter: You cannot close a container. A container says that the containing resources are members - it does not say that other members are not allowed.
RDF collections are used to describe group that contains ONLY the specified members.
-->
</rdf:Description>
</csim:referenceDescription>
</rdf:Description>
</rdf:RDF>
