Location: VPH-MIP case study on CellML @ 036dadde9083 / components / gating-variable.xml.rdf

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2012-09-25 12:45:09+12:00
Desc:
starting to add a bit of documentation following the slides I put together for the VPH-MIP standardisation and ontologies module.
Permanent Source URI:
https://models.fieldml.org/w/andre/VPH-MIP/rawfile/036dadde90835505fa089b9d33be0bf5b4e6db24/components/gating-variable.xml.rdf
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<?xml version="1.0"?>
<RDF xmlns="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml">
      <dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/" rdf:parseType="Resource">
        <vCard:N xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
          <vCard:Family>Nickerson</vCard:Family>
          <vCard:Given>David</vCard:Given>
        </vCard:N>
        <vCard:EMAIL xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
          <rdf:value>david.nickerson@nus.edu.sg</rdf:value>
          <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
        </vCard:EMAIL>
        <vCard:ORG xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" rdf:parseType="Resource">
          <vCard:Orgname>National University of Singapore</vCard:Orgname>
          <vCard:Orgunit>Division of Bioengineering</vCard:Orgunit>
        </vCard:ORG>
      </dc:creator>
      <dcterms:created xmlns:dcterms="http://purl.org/dc/terms/" rdf:parseType="Resource">
        <dcterms:W3CDTF>2008-03-11</dcterms:W3CDTF>
      </dcterms:created>
      <dc:publisher xmlns:dc="http://purl.org/dc/elements/1.1/">
        Division of Bioengineering, National University of Singapore
      </dc:publisher>
    </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#hh_gating_variable_model">
      <dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">
        Standard Hodgkin-Huxley gating variable description.
      </dc:title>
      <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
        <rdf:value>
          Standard Hodgkin-Huxley gating variable description designed to be imported and reused for each standard gate in a model. Both the dynamic and steady state representations of a gating variable are defined in this model.
        </rdf:value>
        <dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/" rdf:parseType="Resource">
          <vCard:FN xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">David Nickerson</vCard:FN>
        </dc:creator>
      </cmeta:comment>
    </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#hh_gating_variable_dynamic">
        <dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">
          Standard Hodgkin-Huxley dynamic gating kinetics.
        </dc:title>
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The standard definition of a dynamic Hodgkin &amp; Huxley gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#time">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The independent variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#gate_dynamic">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The standard Hodgkin &amp; Huxley dynamic gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#gate_initial_dynamic">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The initial value of the dynamic gating variable, must be defined in order to solve the dynamic expression of the gating kinetics.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#alpha_dynamic">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The rate of activation of the gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#beta_dynamic">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The rate of inactivation of the gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#dynamic_gate_calculation">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            Represents equations 7, 15, &amp; 16 in the Hodgkin &amp; Huxley (1952) model.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#hh_gating_variable_steady_state">
        <dc:title xmlns:dc="http://purl.org/dc/elements/1.1/">
          Standard Hodgkin-Huxley steady state gating kinetics.
        </dc:title>
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The standard definition of a steady state Hodgkin &amp; Huxley gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#gate_steady_state">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The standard Hodgkin &amp; Huxley steady state gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#time_steady_state">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            Time. Should be zero at the point of change in membrane potential.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#gate_initial_steady_state">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The value of the gating variable at time=0.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#alpha_steady_state">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The rate of activation of the gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#beta_steady_state">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            The rate of inactivation of the gating variable.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#steady_state_gate_calculation">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            Represents equations 8, 17, &amp; 18 in the Hodgkin &amp; Huxley (1952) model.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#gate_inf_calculation">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            Represents equation 9 and similar unlabeled equations in the Hodgkin &amp; Huxley (1952) model.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
  <rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="gating-variable.xml#tau_calculation">
        <cmeta:comment xmlns:cmeta="http://www.cellml.org/metadata/1.0#" rdf:parseType="Resource">
          <rdf:value>
            Represents equation 10 and similar unlabeled equations in the Hodgkin &amp; Huxley (1952) model.
          </rdf:value>
        </cmeta:comment>
      </rdf:Description>
</RDF>